BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0317.p         (134 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1175 [N] COG1558 Flagellar basal body rod protein Sty Salmone...   181   5e-46
flgC [N] COG1558 Flagellar basal body rod protein Eco Escherichi...   180   9e-46
ZflgC [N] COG1558 Flagellar basal body rod protein EcZ Escherich...   180   9e-46
ECs1452 [N] COG1558 Flagellar basal body rod protein Ecs Escheri...   180   9e-46
YPO1800 [N] COG1558 Flagellar basal body rod protein Ype Yersini...   175   2e-44

>STM1175 [N] COG1558 Flagellar basal body rod protein Sty Salmonella
           typhimurium LT2
          Length = 134

 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 108/134 (80%)

Query: 1   MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60
           M+L NIF++AGSA++AQS+RLN  ASN+ANADS T PDG PY+AKQVVFQ     G    
Sbjct: 1   MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120
           GVKVA+V+E QAP KLVY+P +P+AD NGYV MPNV+ V EMVN +SASR+YQ N+E +N
Sbjct: 61  GVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>flgC [N] COG1558 Flagellar basal body rod protein Eco Escherichia coli
           K12
          Length = 134

 Score =  180 bits (456), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 106/134 (79%)

Query: 1   MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60
           M+L NIF++AGSA++AQSQRLN  ASN+ANADS T PDG PY+AKQVVFQ     G    
Sbjct: 1   MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120
           GVKVA V+E QAP KLVY+P +P+AD  GYV MPNV+ V EMVN +SASR+YQ NVE +N
Sbjct: 61  GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>ZflgC [N] COG1558 Flagellar basal body rod protein EcZ Escherichia coli
           O157:H7 EDL933
          Length = 134

 Score =  180 bits (456), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 106/134 (79%)

Query: 1   MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60
           M+L NIF++AGSA++AQSQRLN  ASN+ANADS T PDG PY+AKQVVFQ     G    
Sbjct: 1   MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120
           GVKVA V+E QAP KLVY+P +P+AD  GYV MPNV+ V EMVN +SASR+YQ NVE +N
Sbjct: 61  GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>ECs1452 [N] COG1558 Flagellar basal body rod protein Ecs Escherichia coli
           O157:H7
          Length = 134

 Score =  180 bits (456), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/134 (64%), Positives = 106/134 (79%)

Query: 1   MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60
           M+L NIF++AGSA++AQSQRLN  ASN+ANADS T PDG PY+AKQVVFQ     G    
Sbjct: 1   MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQVNAAPGAATG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120
           GVKVA V+E QAP KLVY+P +P+AD  GYV MPNV+ V EMVN +SASR+YQ NVE +N
Sbjct: 61  GVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K+M++KTLT+GQ
Sbjct: 121 TVKSMMLKTLTLGQ 134


>YPO1800 [N] COG1558 Flagellar basal body rod protein Ype Yersinia pestis
          Length = 134

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 106/134 (79%)

Query: 1   MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60
           MSL NIF++AGSA+SAQSQR+N +ASN+ANADS T PDG PY+AKQVVFQ     G +  
Sbjct: 1   MSLLNIFDIAGSALSAQSQRMNVSASNLANADSVTGPDGQPYRAKQVVFQVAAQPGQETG 60

Query: 61  GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120
           GV+VA +V+D +P +LVY P +P+AD  GYV MPNV+   EMVN ISASR+YQ NVE +N
Sbjct: 61  GVRVAQIVDDPSPDRLVYQPGNPLADAKGYVRMPNVDVTGEMVNTISASRSYQANVEVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T K++++KTLT+GQ
Sbjct: 121 TTKSLMLKTLTLGQ 134