BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0311.p (392 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1392 [N] COG1419 Flagellar GTP-binding protein Rso Ralstonia ... 324 2e-88 VC2068 [N] COG1419 Flagellar GTP-binding protein Vch Vibrio chol... 218 2e-56 PA1453 [N] COG1419 Flagellar GTP-binding protein Pae Pseudomonas... 189 1e-47 BB0270 Non COG 122 1e-27 Cj0064c [N] COG1419 Flagellar GTP-binding protein Cje Campylobac... 119 1e-26 >RSp1392 [N] COG1419 Flagellar GTP-binding protein Rso Ralstonia solanacearum Length = 615 Score = 324 bits (831), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 155/301 (51%), Positives = 212/301 (70%) Query: 69 DEILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITEN 128 D + ++ EI ++ L ++ ++ G + +P++ + + ML AGFSA L+R + +N Sbjct: 293 DAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVLDN 352 Query: 129 LPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCV 188 +P + + +V+ L +NL + NEN LL+ GGVFA++GPTGVGKTTTTAKLAAR V Sbjct: 353 MPQHGTYDSALDFVQRALEKNLTVVPNENSLLDQGGVFALMGPTGVGKTTTTAKLAARFV 412 Query: 189 MRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLID 248 +RHG+ ++AL++TD YRIGG+EQLRIYGKILGV VH+VKD DL +AL +L+ KH VLID Sbjct: 413 LRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDLSLALGDLREKHVVLID 472 Query: 249 TAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKL 308 T G+ QRD+ V+EQ AML G IKRLL LNAT+ G TL+EVV AY + LAGCI+TK+ Sbjct: 473 TIGMSQRDRAVSEQMAMLHAVGPSIKRLLLLNATSNGKTLDEVVSAYRDANLAGCILTKI 532 Query: 309 DEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEG 368 DEAA++G+ +D +IRH+L LHYV+ GQRVPED+ V NK L R F+ E + F Sbjct: 533 DEAASVGHAMDAMIRHRLPLHYVSYGQRVPEDIAVPNKKMLIHRTFRTSAEQSSFALDSD 592 Query: 369 E 369 E Sbjct: 593 E 593 >VC2068 [N] COG1419 Flagellar GTP-binding protein Vch Vibrio cholerae Length = 495 Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 204/367 (55%), Gaps = 34/367 (9%) Query: 19 AADARVWRSRTRDSGNAQRRAAAPAGAPQGQE-------QEQDRPRSAL----------- 60 +AD + R+ DS +A + + APQ + E+ RP S L Sbjct: 109 SADEQEHRAENEDSLSALLKRQSENRAPQRNQTQRSQSSSERQRPDSPLGKLLQEDADAR 168 Query: 61 --PEFDGKDYDEILSE----VMSEIRSMRG-------VLETQLAEISWGGTQKREPLKGI 107 P D YD + E +SE+ SMR +LE Q++ + W ++REPL+ + Sbjct: 169 RKPRLDPTRYDRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAM 228 Query: 108 VLKEMLAAGFSASLSRLITENLPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFA 167 ++K + G S ++ + +P + + +++ + + ++++L+ GGV A Sbjct: 229 LIKRLERMGVSLEMADQLACYIPEETPPPKAWKALLGLVSDQIPVV--KHDILKRGGVVA 286 Query: 168 MVGPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVK 227 ++GPTGVGKTTT AKLAAR M +GS +AL+TTD YRIG +EQL IYG+I+G V K Sbjct: 287 LLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAK 346 Query: 228 DETDLRIALEELKGKHTVLIDTAGVGQRDQMVAEQ-DAMLTGAGVDIKRLLCLNATATGG 286 D +L + +L+ + +L+DTAG+GQRD ++EQ D ++ +G I L L ATA Sbjct: 347 DSNELADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRK 406 Query: 287 TLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANK 346 L E + + L+GCI+TKLDE ++G + VV+++ L + Y+ANGQRVPED+ +A Sbjct: 407 VLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQP 466 Query: 347 LYLADRA 353 Y+ +A Sbjct: 467 KYMVAKA 473 >PA1453 [N] COG1419 Flagellar GTP-binding protein Pae Pseudomonas aeruginosa Length = 429 Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 162/301 (53%), Gaps = 2/301 (0%) Query: 70 EILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENL 129 + L + E+ +R ++E QL I+WG Q + P + + + + G A LS+ + E + Sbjct: 118 QTLEAMRFELNGLRELIEVQLGSIAWGQLQHQRPQQANLWRRLQRMGLPAELSKPLLERV 177 Query: 130 PANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVM 189 A ++ + + L+R + T E + L+ GGV A+VGP G GKTTT AK+AAR V+ Sbjct: 178 AAVGDTRQAWRMLLAHLSRAVQT--PEQDPLDAGGVLALVGPAGAGKTTTLAKMAARYVL 235 Query: 190 RHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDT 249 ++G+ LAL++ D YRIG EQ++ G+IL V V V L AL L K VLIDT Sbjct: 236 KYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPGQSLIQALAPLARKRMVLIDT 295 Query: 250 AGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLD 309 AG+ D + Q L +++K L + T+ L Y GLAGCI+TKLD Sbjct: 296 AGLPASDPALRMQLEALASPSLNVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLD 355 Query: 310 EAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGE 369 EA ++G + + I +L + Y+A+G R+P+DL VA L RA + P E E Sbjct: 356 EAGSLGESMALAIAQRLPVAYLADGPRIPDDLQVARSHQLVSRAVSLQAPEEPSEDAMAE 415 Query: 370 L 370 + Sbjct: 416 M 416 >BB0270 Non COG Length = 388 Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 3/191 (1%) Query: 165 VFAMVGPTGVGKTTTTAKLAARCVMRHGSGKL--ALITTDGYRIGGYEQLRIYGKILGVM 222 VF +VGPTGVGKTTT AKLAA + S L +IT D YRIG +Q++ YG I+G+ Sbjct: 176 VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 235 Query: 223 VHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM-VAEQDAMLTGAGVDIKRLLCLNA 281 V +++ DL+ + + K +L+DT G +D M +AE +L G D + L +++ Sbjct: 236 VRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSS 295 Query: 282 TATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDL 341 T + E+ H +S I TK+DE +GN++ ++ K + YV +GQ VP ++ Sbjct: 296 TTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCVGNLISLIYEMKKVVSYVTDGQIVPHNI 355 Query: 342 HVANKLYLADR 352 VA L R Sbjct: 356 SVAEPLTFIRR 366 >Cj0064c [N] COG1419 Flagellar GTP-binding protein Cje Campylobacter jejuni Length = 484 Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 121/242 (50%), Gaps = 6/242 (2%) Query: 112 MLAAGFSASLSRLITENLPANSKSQD--IMFWVKSVLARNLNTLANENELLENGGVFAMV 169 ML A + I EN+PA K+ + + S+L RN+ E+++ + + +V Sbjct: 232 MLENHLEAIMKATI-ENMPAAMKTNKDAVQRYFHSLL-RNILPCRVESDI-KKQKIMMLV 288 Query: 170 GPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE 229 GPTGVGKTTT AKLA R K +IT D YRIG EQL Y K++ + + + Sbjct: 289 GPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEP 348 Query: 230 TDLRIALEELKGKHTVLIDTAGVGQRDQ-MVAEQDAMLTGAGVDIKRLLCLNATATGGTL 288 DL A++ L +L+DT G Q DQ +A+ L + +I L ++A L Sbjct: 349 KDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAEIDVNLVVSANTKHEDL 408 Query: 289 NEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLY 348 E+ +S + IITK DE GN+ +V + L + + GQ VP+DL VAN + Sbjct: 409 MEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSIGQEVPDDLEVANSDF 468 Query: 349 LA 350 L Sbjct: 469 LV 470