BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0305.p (174 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1403 [NT] COG2201 Chemotaxis response regulator containing a ... 254 6e-68 YPO1679 [NT] COG2201 Chemotaxis response regulator containing a ... 233 2e-61 STM1917 [NT] COG2201 Chemotaxis response regulator containing a ... 226 2e-59 ZcheB [NT] COG2201 Chemotaxis response regulator containing a Ch... 222 3e-58 ECs2593 [NT] COG2201 Chemotaxis response regulator containing a ... 222 3e-58 >RSp1403 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Rso Ralstonia solanacearum Length = 381 Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 125/174 (71%), Positives = 140/174 (80%), Gaps = 1/174 (0%) Query: 1 MPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHLKLV 60 MP DCPGILI QHMP GFT SFA+RL+ LC+I V E+ ERVLPGHAYIAPG HL L Sbjct: 209 MPPDCPGILIVQHMPAGFTTSFAKRLDGLCRIRVKEAVHGERVLPGHAYIAPGDMHLSLG 268 Query: 61 RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEMRNA 120 RSGANY+T+LDQ PPVNRHRP+VDVLF+SAA AG NA+GVILTGMGKDGA GMLEMRNA Sbjct: 269 RSGANYVTELDQNPPVNRHRPAVDVLFRSAARNAGANALGVILTGMGKDGAAGMLEMRNA 328 Query: 121 GAYNFAQDEASCVVFGMPREAIAVGAAHEVLALQAMPGRVLAWLAEHGSRALRV 174 GAYN AQDEASCVV+GMP+EA+A G HE+L L + VLA L+ HG R RV Sbjct: 329 GAYNVAQDEASCVVYGMPKEAVAHGGVHEILPLHQIGPHVLARLSAHG-RVTRV 381 >YPO1679 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Ype Yersinia pestis Length = 349 Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%) Query: 1 MPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHLKLV 60 +P P +LITQHMP GFTRSFA+RLN LC+I+V E+ ERVLPGHAYIAPG HL+L Sbjct: 178 LPPTSPALLITQHMPPGFTRSFAERLNKLCQITVKEAEDGERVLPGHAYIAPGDRHLELA 237 Query: 61 RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEMRNA 120 RSGANY ++ GP VNRHRPSVDVLF+S A AG+NAVGVILTGMG DGA G+LEM A Sbjct: 238 RSGANYQVRIHDGPAVNRHRPSVDVLFRSVAQYAGRNAVGVILTGMGNDGAAGLLEMHRA 297 Query: 121 GAYNFAQDEASCVVFGMPREAIAVGAAHEVLALQAMPGRVLAWLAEHGSRALRV 174 GAY AQ+EASCVVFGMPREAIA+G ++V+ L + R+LA ++ +ALR+ Sbjct: 298 GAYTLAQNEASCVVFGMPREAIAMGGVNDVVELNQISQRMLAQIS--SGQALRI 349 >STM1917 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Sty Salmonella typhimurium LT2 Length = 349 Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 132/174 (75%), Gaps = 2/174 (1%) Query: 1 MPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHLKLV 60 +P P ++ITQHMP GFTRSFA+RLN LC+ISV E+ ERVLPGHAYIAPG H++L Sbjct: 178 LPLSSPAVIITQHMPPGFTRSFAERLNKLCQISVKEAEDGERVLPGHAYIAPGDKHMELA 237 Query: 61 RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEMRNA 120 RSGANY ++ GPPVNRHRPSVDVLF S A AG+NAVGVILTGMG DGA GML M A Sbjct: 238 RSGANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAVGVILTGMGNDGAAGMLAMYQA 297 Query: 121 GAYNFAQDEASCVVFGMPREAIAVGAAHEVLALQAMPGRVLAWLAEHGSRALRV 174 GA+ AQ+EASCVVFGMPREAI +G EV+ L + ++LA ++ +A+R+ Sbjct: 298 GAWTIAQNEASCVVFGMPREAINMGGVSEVVDLSQVSQQMLAKIS--AGQAIRI 349 >ZcheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain EcZ Escherichia coli O157:H7 EDL933 Length = 349 Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%) Query: 1 MPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHLKLV 60 +P P +LITQHMP GFTRSFA RLN LC+I V E+ ERVLPGHAYIAPG H++L Sbjct: 178 LPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHMELA 237 Query: 61 RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEMRNA 120 RSGANY ++ GP VNRHRPSVDVLF S A AG+NAVGVILTGMG DGA GML MR A Sbjct: 238 RSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAMRQA 297 Query: 121 GAYNFAQDEASCVVFGMPREAIAVGAAHEVLALQAMPGRVLAWLAEHGSRALRV 174 GA+ AQ+EASCVVFGMPREAI +G EV+ L + ++LA ++ +A+R+ Sbjct: 298 GAWTLAQNEASCVVFGMPREAINMGGVCEVVDLNQVSQQMLAKIS--AGQAIRI 349 >ECs2593 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Ecs Escherichia coli O157:H7 Length = 349 Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 130/174 (74%), Gaps = 2/174 (1%) Query: 1 MPSDCPGILITQHMPEGFTRSFAQRLNNLCKISVVESAGNERVLPGHAYIAPGHSHLKLV 60 +P P +LITQHMP GFTRSFA RLN LC+I V E+ ERVLPGHAYIAPG H++L Sbjct: 178 LPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHMELA 237 Query: 61 RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEMRNA 120 RSGANY ++ GP VNRHRPSVDVLF S A AG+NAVGVILTGMG DGA GML MR A Sbjct: 238 RSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAMRQA 297 Query: 121 GAYNFAQDEASCVVFGMPREAIAVGAAHEVLALQAMPGRVLAWLAEHGSRALRV 174 GA+ AQ+EASCVVFGMPREAI +G EV+ L + ++LA ++ +A+R+ Sbjct: 298 GAWTLAQNEASCVVFGMPREAINMGGVCEVVDLNQVSQQMLAKIS--AGQAIRI 349