BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0291.p         (235 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1052 [G] COG1929 Glycerate kinase Pae Pseudomonas aeruginosa        110   3e-24
STM0525 [G] COG1929 Glycerate kinase Sty Salmonella typhimurium LT2   109   4e-24
ZybbZ [G] COG1929 Glycerate kinase EcZ Escherichia coli O157:H7 ...   109   6e-24
ECs0576 [G] COG1929 Glycerate kinase Ecs Escherichia coli O157:H7     109   6e-24
PM1741 [G] COG1929 Glycerate kinase Pmu Pasteurella multocida         108   1e-23

>PA1052 [G] COG1929 Glycerate kinase Pae Pseudomonas aeruginosa
          Length = 381

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 99/159 (62%), Gaps = 1/159 (0%)

Query: 48  VVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLDALMHA-GGERFA 106
           +VIAPDSFK SLSA DVA AI  G +   P AE+ LRP+ADGGEGT+DA++ A  GER  
Sbjct: 3   IVIAPDSFKESLSAPDVAEAIARGWRRVFPQAEVLLRPLADGGEGTVDAVLAATAGERRE 62

Query: 107 VACRNAAGQMTEAPVGILKDGSAVVESAAIVGLTDAAGTAVAVERRSTLGVGDAIKALLD 166
                  G+ T A  G L D +AV+E A+  GL           R S+ G G+ I+A LD
Sbjct: 63  CRVEGPLGEPTLAHWGWLDDATAVIEMASASGLHLVPRDRRDATRSSSRGTGELIRAALD 122

Query: 167 RGARSFLVALGGSSTNDGGAGLLAALGVVFYDAAGVEVA 205
            GAR  ++ LGGS+TND GAGLL ALGV F  A G E+A
Sbjct: 123 AGARKIILGLGGSATNDAGAGLLGALGVRFLAADGEELA 161


>STM0525 [G] COG1929 Glycerate kinase Sty Salmonella typhimurium LT2
          Length = 382

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 92/156 (58%), Gaps = 2/156 (1%)

Query: 48  VVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLDALMHA-GGERFA 106
           +VIAPDSFK SLSA+   +AI AG     PDA     PIADGGEGT+DA++ A GG+R +
Sbjct: 3   IVIAPDSFKESLSADKCCQAIKAGFSTVFPDARYVCLPIADGGEGTVDAMVAATGGKRVS 62

Query: 107 VACRNAAGQMTEAPVGILKDG-SAVVESAAIVGLTDAAGTAVAVERRSTLGVGDAIKALL 165
           V      G+      G+  DG +A++E AA  GL   A  A      S+ G G+ I+  L
Sbjct: 63  VDVSGPMGEKVNGFYGLTGDGKTAIIEMAAASGLMLVAPEARNPLLASSFGTGELIRHAL 122

Query: 166 DRGARSFLVALGGSSTNDGGAGLLAALGVVFYDAAG 201
           D G R  ++ +GGS+T DGG G+  ALGV F DA G
Sbjct: 123 DAGIRHIILGIGGSATVDGGMGVAQALGVRFLDAQG 158


>ZybbZ [G] COG1929 Glycerate kinase EcZ Escherichia coli O157:H7 EDL933
          Length = 381

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 93/161 (57%), Gaps = 12/161 (7%)

Query: 48  VVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLDALMHA-GGERFA 106
           +VIAPDSFK SLSAE   +AI AG     PDA     PIADGGEGT+DA++ A GG    
Sbjct: 3   IVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVT 62

Query: 107 VACRNAAGQMTEAPVGILKDG-SAVVESAAIVGLTDAAGTAVAVERR-----STLGVGDA 160
           +      G+   A  GI  DG +AV+E AA  GL       VA E+R     S+ G G+ 
Sbjct: 63  LEVCGPMGEKVNAFYGITGDGKTAVIEMAAASGL-----MLVAPEKRNPLLASSFGTGEL 117

Query: 161 IKALLDRGARSFLVALGGSSTNDGGAGLLAALGVVFYDAAG 201
           I+  LD G R  ++ +GGS+T DGG G+  ALGV F DA G
Sbjct: 118 IRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADG 158


>ECs0576 [G] COG1929 Glycerate kinase Ecs Escherichia coli O157:H7
          Length = 381

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 93/161 (57%), Gaps = 12/161 (7%)

Query: 48  VVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLDALMHA-GGERFA 106
           +VIAPDSFK SLSAE   +AI AG     PDA     PIADGGEGT+DA++ A GG    
Sbjct: 3   IVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVT 62

Query: 107 VACRNAAGQMTEAPVGILKDG-SAVVESAAIVGLTDAAGTAVAVERR-----STLGVGDA 160
           +      G+   A  GI  DG +AV+E AA  GL       VA E+R     S+ G G+ 
Sbjct: 63  LEVCGPMGEKVNAFYGITGDGKTAVIEMAAASGL-----MLVAPEKRNPLLASSFGTGEL 117

Query: 161 IKALLDRGARSFLVALGGSSTNDGGAGLLAALGVVFYDAAG 201
           I+  LD G R  ++ +GGS+T DGG G+  ALGV F DA G
Sbjct: 118 IRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADG 158


>PM1741 [G] COG1929 Glycerate kinase Pmu Pasteurella multocida
          Length = 381

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 12/158 (7%)

Query: 48  VVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLDALMHA-GGERFA 106
           +VIAPDSFK SL+A +VA+AI  G Q  +P AE  L P+ADGGEGT+ +L+ A  GE   
Sbjct: 3   IVIAPDSFKESLTALEVAQAIKIGFQKILPHAEYVLVPMADGGEGTVQSLVDATQGEIIN 62

Query: 107 VACRNAAGQMTEAPVGILKDG-SAVVESAAIVGLTDAAGTAVAVERRSTL-----GVGDA 160
                  G + +A  G+  D  +A++E AA  GL       V VE+R+ L     G G  
Sbjct: 63  TEVIAPLGNLIQAFFGLSGDKQTAIIEMAAASGL-----HLVPVEQRNPLKTTSFGTGQL 117

Query: 161 IKALLDRGARSFLVALGGSSTNDGGAGLLAALGVVFYD 198
           IKA LD G +  ++ +GGS+TND G G+L ALG +F D
Sbjct: 118 IKAALDLGVKKIILGIGGSATNDAGVGMLQALGALFLD 155