BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0288.p         (112 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_galE [M] COG1087 UDP-glucose 4-epimerase Bsu Bacillus subtilis     146   1e-35
SP1607 [M] COG1087 UDP-glucose 4-epimerase Spn Streptococcus pne...   137   6e-33
PM0286 [M] COG1087 UDP-glucose 4-epimerase Pmu Pasteurella multo...   135   2e-32
RSp1101 [M] COG1087 UDP-glucose 4-epimerase Rso Ralstonia solana...   132   2e-31
HI0351 [M] COG1087 UDP-glucose 4-epimerase Hin Haemophilus influ...   132   2e-31

>BS_galE [M] COG1087 UDP-glucose 4-epimerase Bsu Bacillus subtilis
          Length = 339

 Score =  146 bits (368), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 77/101 (76%)

Query: 1   VRDYIHVVDLALGHLKTLRKLEQGPGVYTYNLGTGRGNSVLEMLAAFEQACGNKLPYQLV 60
           VRDYIHVVDLA GH+K L K+    G   YNLGTG G SVLEM+ AFE+  G ++PY+  
Sbjct: 229 VRDYIHVVDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFA 288

Query: 61  DRRPGDIACCYAATERAERELGWRAQRGIEAMCADTWRWQA 101
           DRRPGDIA C+A   +A+RELGW A+RG+E MCAD+WRWQ+
Sbjct: 289 DRRPGDIATCFADPAKAKRELGWEAKRGLEEMCADSWRWQS 329


>SP1607 [M] COG1087 UDP-glucose 4-epimerase Spn Streptococcus pneumoniae
           TIGR4
          Length = 339

 Score =  137 bits (345), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 76/101 (75%)

Query: 1   VRDYIHVVDLALGHLKTLRKLEQGPGVYTYNLGTGRGNSVLEMLAAFEQACGNKLPYQLV 60
           VRDYIHVVDLA GH+  L+K+++G G+  YNLGTG+G SVLE++   E+A G  +PY++V
Sbjct: 231 VRDYIHVVDLAKGHVAALKKIQKGSGLNVYNLGTGKGYSVLEIIQNMEKAVGRPIPYRIV 290

Query: 61  DRRPGDIACCYAATERAERELGWRAQRGIEAMCADTWRWQA 101
           +RRPGDIA CY+   +A+ ELGW A+  I  MC D WRWQ+
Sbjct: 291 ERRPGDIAACYSDPAKAKAELGWEAELDITQMCEDAWRWQS 331


>PM0286 [M] COG1087 UDP-glucose 4-epimerase Pmu Pasteurella multocida
          Length = 338

 Score =  135 bits (340), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/100 (61%), Positives = 73/100 (73%)

Query: 1   VRDYIHVVDLALGHLKTLRKLEQGPGVYTYNLGTGRGNSVLEMLAAFEQACGNKLPYQLV 60
           VRDYIHVVDLA+GHLK L + E   G++ YNLGTG G SVL+M+ AFE+    K+PY+LV
Sbjct: 230 VRDYIHVVDLAIGHLKALDRHEGDAGLHIYNLGTGSGYSVLDMVKAFEKVNDIKIPYKLV 289

Query: 61  DRRPGDIACCYAATERAERELGWRAQRGIEAMCADTWRWQ 100
           DRRPGDIA CY+    A+ EL W A RG+E M  DTW WQ
Sbjct: 290 DRRPGDIATCYSDPSLAKTELNWTAARGLEQMMKDTWHWQ 329


>RSp1101 [M] COG1087 UDP-glucose 4-epimerase Rso Ralstonia solanacearum
          Length = 341

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%)

Query: 1   VRDYIHVVDLALGHLKTLRKLEQGPGVYTYNLGTGRGNSVLEMLAAFEQACGNKLPYQLV 60
           VRDYIHVVDLA GHL  L  L +    +T NLGTGRG SVLE++AA+++A G  +PY++V
Sbjct: 231 VRDYIHVVDLARGHLSALDVLRRDGRGFTVNLGTGRGYSVLEVVAAYQRASGRPIPYEIV 290

Query: 61  DRRPGDIACCYAATERAERELGWRAQRGIEAMCADTWRWQAL 102
            RRPGDIA CYA    A  +LGWRAQ GIE MC D+WRWQ++
Sbjct: 291 ARRPGDIAACYADPSLAASQLGWRAQYGIERMCEDSWRWQSM 332


>HI0351 [M] COG1087 UDP-glucose 4-epimerase Hin Haemophilus influenzae
          Length = 338

 Score =  132 bits (332), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 74/100 (74%)

Query: 1   VRDYIHVVDLALGHLKTLRKLEQGPGVYTYNLGTGRGNSVLEMLAAFEQACGNKLPYQLV 60
           VRDYIHVVDLA+GHLK L++ E   G++ YNLGTG G SVL+M+ AFE+A    + Y+LV
Sbjct: 230 VRDYIHVVDLAVGHLKALQRHENDAGLHIYNLGTGHGYSVLDMVKAFEKANNITIAYKLV 289

Query: 61  DRRPGDIACCYAATERAERELGWRAQRGIEAMCADTWRWQ 100
           +RR GDIA CY+    A +ELGW A+RG+E M  DTW WQ
Sbjct: 290 ERRSGDIATCYSDPSLAAKELGWVAERGLEKMMQDTWNWQ 329