BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0276.p (495 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2317 [M] COG1922 Teichoic acid biosynthesis proteins Cac Clos... 144 4e-34 slr1118 [M] COG1922 Teichoic acid biosynthesis proteins Syn Syne... 119 2e-26 all4422 [M] COG1922 Teichoic acid biosynthesis proteins Nos Nost... 107 7e-23 TM0818 [M] COG1922 Teichoic acid biosynthesis proteins Tma Therm... 105 2e-22 lin2665 [M] COG1922 Teichoic acid biosynthesis proteins Lin List... 102 3e-21 >CAC2317 [M] COG1922 Teichoic acid biosynthesis proteins Cac Clostridium acetobutylicum Length = 250 Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 45 SILGLPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIA 104 L D V++ +A I+ + + ++ TPN++ V D F+ +DL + Sbjct: 7 KFLNTNVDNVNMKEAIEIIDGFIKDGKYHYVVTPNVDHIVRLEKDEEFKKVYENADLILT 66 Query: 105 DGMPLVWIARALGLPIKERVAGSSLFQALREQRMENGQAPLRVYFFGGPPGVAQAADEKL 164 DGMPLVWI++ L P+KE+V+GS LF + + E V+ G GVA A E L Sbjct: 67 DGMPLVWISKWLKTPVKEKVSGSDLFPRVCKLAAEKEYT---VFILGAAEGVAHKAGENL 123 Query: 165 NATPSGLRSVGYASPGFGSIEEMSPPQA---LAHINDSRADFLVVALGAKKGQAWIQHNL 221 A GL+ G SP FG E P + + IND + D L V + A K + ++ Sbjct: 124 KAKYKGLKVAGTYSPSFGF--EKKPEEIKYIIEMINDIKPDILAVGVSAPKQEKFVAQYR 181 Query: 222 AQLRAPVVSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEP-KLWRRYFDDGMALLR 280 +L+ PV +GA ++ AGT+ RAP W QK+GLEW +R+ +P K+++R F D + ++ Sbjct: 182 DELKVPVALAIGASIDIEAGTLKRAPLWMQKSGLEWFYRMFRQPKKIFKRVFFDDLKIIG 241 Query: 281 LLA 283 + + Sbjct: 242 IYS 244 >slr1118 [M] COG1922 Teichoic acid biosynthesis proteins Syn Synechocystis Length = 251 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 116/241 (48%), Gaps = 7/241 (2%) Query: 45 SILGLPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIA 104 +I+ D GQA + A ++ N++ ++ + +++ + Q+ L Sbjct: 6 TIISTRIDCTDYGQATATIINLAKAAIASYVVAANVHVVMSAYGNKSYQEIINQAVLVTP 65 Query: 105 DGMPLVWIARALGLPIKERVAGSSLFQALREQRM-ENGQAPLRVYFFGGPPGVAQAADEK 163 DGMPLVW + LG P RV G L + ++ EN L +Y +GG Q Sbjct: 66 DGMPLVWGLKLLGYPQATRVYGPDLMLTICQRAAAEN----LGIYLYGGTEDCLQQLKVN 121 Query: 164 LNATPSGLRSVGYASPGFGSIEEMSPPQALAHINDSRADFLVVALGAKKGQAWIQHNLAQ 223 L L+ VG SP F +E ALA I S A L V LG K + W+ ++ + Sbjct: 122 LIKRFPKLKIVGADSPPFRPLEPEEEKNALAKIKQSGAGILFVGLGCPKQEIWMANHYQK 181 Query: 224 LRAPVVSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEPK-LWRRYFDDGMALLRLL 282 + +V +GA NF +G VS+APRW GLEWL+R++ EPK LWRRY + A + L Sbjct: 182 IDLVMVG-VGAAFNFHSGLVSQAPRWLMAMGLEWLYRLRMEPKRLWRRYLINNPAFIVLF 240 Query: 283 A 283 Sbjct: 241 T 241 >all4422 [M] COG1922 Teichoic acid biosynthesis proteins Nos Nostoc sp. PCC 7120 Length = 257 Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 16/258 (6%) Query: 40 QRDVWSILGLPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQS 99 +R + +LG+ D +S+ + ++ + + ++ ++ NL+ D + ++ Sbjct: 3 KRPSYKLLGVSVDALSIPELNCLIGESIEQGKKWIIANHNLHSLYLFHKDLEMQAFYAKA 62 Query: 100 DLSIADGMPLVWIARALGLPIK--ERVAGSSLFQALREQRMENGQAPLRVYFFGGPPGVA 157 + D MP+V+I + LG P+K +RV + L E E R+++ G PGVA Sbjct: 63 EYIHIDSMPIVFIGKLLGFPMKREQRVTYADWVWPLME---EAANKSWRIFYLGSKPGVA 119 Query: 158 QAADEKLNATPSGLR---SVGYASPGFGSIEEMSPPQALAHINDSRADFLVVALGAKKGQ 214 + L GL+ S GY S E ++ +A IND + L+V +G + + Sbjct: 120 EQGAVILRRKFPGLKIACSHGYFDTSEESEENLTVIKA---INDYKPHVLMVGMGMPRQE 176 Query: 215 AWIQHNLAQLRAPVVSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEP-KLWRRYFD 273 WI NL +++ + GA +++VAG + PRW + GLEWL+R+ EP +LWRRY Sbjct: 177 HWISQNLERIQPNAILTSGACLDYVAGAIPTPPRWMGRMGLEWLYRLLTEPTRLWRRYLL 236 Query: 274 DGMALLRLLATRVLPCIW 291 + L T L IW Sbjct: 237 EPW----FLGTLFLREIW 250 >TM0818 [M] COG1922 Teichoic acid biosynthesis proteins Tma Thermotoga maritima Length = 274 Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 8/194 (4%) Query: 72 RCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIADGMPLVWIARALGLPIKERVAGSSLFQ 131 + F+ T N + + ++DA +R V +DL + DG +VW + L ER+ G + + Sbjct: 63 KTFVVTMNASILLKAIEDAGYRAIVNSADLVVPDGFGVVWAMKTLTGETTERLPGVEIMK 122 Query: 132 ALREQRMENGQAPLRVYFFGGPPGVAQAADEKLNATPSGLRSVGYASPGFGSIEEMSPPQ 191 L E+ E G +VY G + + A + L SG+R VG GF S E P+ Sbjct: 123 HLCERSKEKG---WKVYLLGTKREIVEKAKQVLER--SGVRVVG-CHDGFFS--EKESPK 174 Query: 192 ALAHINDSRADFLVVALGAKKGQAWIQHNLAQLRAPVVSHLGAVVNFVAGTVSRAPRWAQ 251 + +N S D L V +G + + WI N QL + +G ++ V+G RAP W Q Sbjct: 175 IVEDVNRSSTDLLFVGMGVPRQEEWIYRNFPQLNVKLAMGVGGSIDVVSGKKKRAPEWVQ 234 Query: 252 KTGLEWLWRIKEEP 265 + LEWL+R + P Sbjct: 235 RMNLEWLYRFFQSP 248 >lin2665 [M] COG1922 Teichoic acid biosynthesis proteins Lin Listeria innocua Length = 244 Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 12/229 (5%) Query: 45 SILGLPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIA 104 SIL +PF + + L A R F+ T N + D F + Q+D + Sbjct: 7 SILNIPFYNTTQAEFIEELHNVAQNGERRFVVTANPEIVMHARTDKEFEGILRQADYIVP 66 Query: 105 DGMPLVWIARALGLPIKERVAGSSLFQALREQRMENGQAPLRVYFFGGPPGVAQAADEKL 164 DG+ ++ + LG P+KERV G L E+ PLR YF G P V+Q + K+ Sbjct: 67 DGIGIIMASEKLGNPLKERVTGYDTMIGLLEK-------PLRCYFLGAKPEVSQGVESKV 119 Query: 165 NATPSGLRSVGYASPGFGSIEEMSPPQALA-HINDSRADFLVVALGAKKGQAWIQHNLAQ 223 N G F ++E +A+A I + D + VALG+ + WI +A Sbjct: 120 NEKYPQAIVCGVHHGYFDALES----EAIAKEIIAAEPDVIFVALGSPAQEKWILSQMAN 175 Query: 224 LRAPVVSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEPKLWRRYF 272 + +G + + V RAP+ K LEW++R+ P WRR+F Sbjct: 176 FSKGIFIGVGGSFDVLTDNVKRAPKIWIKLRLEWVYRLLANPSRWRRFF 224