BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0257.p         (135 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1584 [K] COG0789 Predicted transcriptional regulators Rso Ral...   162   2e-40
XF0744 [K] COG0789 Predicted transcriptional regulators Xfa Xyle...   128   4e-30
PA2737 [K] COG0789 Predicted transcriptional regulators Pae Pseu...    93   2e-19
mlr8426 [K] COG0789 Predicted transcriptional regulators Mlo Mes...    79   4e-15
BMEI1178 [K] COG0789 Predicted transcriptional regulators Bme Br...    77   1e-14

>RSc1584 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 146

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 11 IVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRR 70
          I LPPIPAKRYFTIGEVS+LC VKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRR
Sbjct: 10 INLPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRR 69

Query: 71 IRELLYEQGFTISGARNKLD 90
          IRELLYEQGFTI+GARN+LD
Sbjct: 70 IRELLYEQGFTINGARNRLD 89


>XF0744 [K] COG0789 Predicted transcriptional regulators Xfa Xylella
          fastidiosa 9a5c
          Length = 120

 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 69/81 (85%)

Query: 13 LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIR 72
          LP IPAKRYF+IGEV++LC VK HVLRYWE EF  L+P KRRGNRRYYQ H+VLL+R+IR
Sbjct: 12 LPTIPAKRYFSIGEVADLCDVKQHVLRYWETEFPSLEPAKRRGNRRYYQRHDVLLVRQIR 71

Query: 73 ELLYEQGFTISGARNKLDGSN 93
           LLYEQG+TI GAR +L+G +
Sbjct: 72 SLLYEQGYTIGGARLRLEGES 92


>PA2737 [K] COG0789 Predicted transcriptional regulators Pae Pseudomonas
           aeruginosa
          Length = 85

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 8/93 (8%)

Query: 37  VLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTISGARNKLDGSNEPE 96
           +LRYWEQEF QL PVKRRGNRRYYQ  +VL+IR+IR LLY+QGFTI GAR +L G    +
Sbjct: 1   MLRYWEQEFPQLNPVKRRGNRRYYQRQDVLMIRQIRALLYDQGFTIGGARQRLSGDEAKD 60

Query: 97  QPEIVEPPAISLDEEGIEKVRAELLDILQVLRP 129
                    ++  ++ I ++ AEL ++L VL+ 
Sbjct: 61  D--------VTQYKQLIRQMIAELEEVLLVLKK 85


>mlr8426 [K] COG0789 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 210

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 3   DRVNKPAAIVLPPIPAK--RYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           DR    +++ + P+      + TI EV+E   +  HVLR+WE  F Q+KP+KR G RRYY
Sbjct: 19  DRSGSRSSVRISPMDKSPDAFRTISEVAEDLDLPQHVLRFWETRFNQIKPMKRGGGRRYY 78

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKL 89
           +  +V LI+ IR +LY+QG+TI G +  L
Sbjct: 79  RPQDVELIKGIRHMLYDQGYTIKGVQKLL 107


>BMEI1178 [K] COG0789 Predicted transcriptional regulators Bme Brucella
          melitensis
          Length = 193

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 51/73 (69%)

Query: 21 YFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGF 80
          + TI EV+E   +  HVLR+WE  FTQ+KP+KR G RRYY+  +V L++ IR LLY+QG+
Sbjct: 22 FRTISEVAEDLDLPQHVLRFWETRFTQIKPMKRGGGRRYYRPLDVELLKGIRHLLYDQGY 81

Query: 81 TISGARNKLDGSN 93
          TI G +  L  +N
Sbjct: 82 TIKGVQRLLRENN 94