BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0234.p (377 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0021 [T] COG4564 Signal transduction histidine kinase Rso Ral... 313 5e-85 AGpA381 [T] COG4564 Signal transduction histidine kinase Atu Agr... 214 4e-55 BMEI1583 Non COG 210 3e-54 VC1276 [T] COG4564 Signal transduction histidine kinase Vch Vibr... 185 2e-46 VC0216 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr... 135 1e-31 >RSc0021 [T] COG4564 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 487 Score = 313 bits (801), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 160/286 (55%), Positives = 203/286 (70%) Query: 1 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 MKLRQKI+ LA+ PL +A AI L VR+Q++ LA +R VE+AYL +K ELR +V LA Sbjct: 1 MKLRQKILLLAVAPLTIAMLAIMLTVRHQSIALAQHERQLVESAYLQAKEAELRAHVKLA 60 Query: 61 QHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMW 120 + A+A L +GR+D A ++EA LA L+FG DGYFF+YD GR++MHPRQPELVG ++W Sbjct: 61 RSAIAPLLASGRSDQATRDEAMRTLARLDFGPDGYFFLYDLRGRNLMHPRQPELVGRDLW 120 Query: 121 NWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYL 180 DA G TIQ L+ A+ GGG+ RYLW KPSS KLGYV +P+WGW++GTG+YL Sbjct: 121 RLTDARGQPTIQRLVAAAQAGGGFVRYLWDKPSSHQSVAKLGYVEPIPQWGWMVGTGLYL 180 Query: 181 DDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDVE L +IDR+ + QTL + +IA L V +GL LN+S+HR ADAKLRQLAQ Sbjct: 181 DDVEQTLREIDRRAQANIDQTLAWVVAIAAVCILLVAGSGLALNVSDHREADAKLRQLAQ 240 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQA 286 +VV SQE+ERAR+SR+LHDGISQ LVS KL +E A L P A Sbjct: 241 QVVHSQEDERARVSRELHDGISQVLVSTKLLLETAHGHLEPPPGHA 286 >AGpA381 [T] COG4564 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 470 Score = 214 bits (544), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 178/292 (60%), Gaps = 3/292 (1%) Query: 1 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 M+LR +I+ LAI PL LA I ++ +Q++ LA A E LA+K EL + +LA Sbjct: 6 MRLRNQILALAIGPLVLAIIIITALITWQSMTLARTSIDAFERNMLAAKEAELLNLTNLA 65 Query: 61 QHALAHLYD-TGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEM 119 A+ +YD G D+A K+E + +L DL++G DGYFFVYD G +++HPRQ G+ Sbjct: 66 LSAIRSVYDKAGPDDEAAKKEVKRILMDLDYGTDGYFFVYDYDGLNVVHPRQNFRPGNNW 125 Query: 120 WNWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIY 179 + D G+ I LI +A++GGG +Y W KPS++ +A KL + L +W W+IGTG+Y Sbjct: 126 LDLYDPDGNRVIYDLIVKAKEGGGLVQYKWEKPSTRKIADKLSFAAGLDKWRWMIGTGVY 185 Query: 180 LDDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLA 239 LDDV AA A + + L++A A+ + L V +LLNL + R+AD +L++L Sbjct: 186 LDDVFAATAAAKEELRHSITWNFLIVALFAVPAVLLVFATCMLLNLRQQRLADGRLKELM 245 Query: 240 QRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARA 291 QRV+ +Q+EER R++R+LHDGISQ LV ++ I+ L R TP+ A Sbjct: 246 QRVIDTQDEERLRIARELHDGISQNLVGVRFAID--LARRKVTPDNVGAVEA 295 >BMEI1583 Non COG Length = 439 Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/260 (41%), Positives = 157/260 (60%), Gaps = 1/260 (0%) Query: 17 LAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLAQHALAHLYD-TGRTDD 75 +A I + +Q+ L A E L +K TEL + +LA A+ +Y+ G D+ Sbjct: 1 MAILTITAFITWQSANLVQSSIATFEKNMLKAKETELLNLTNLALSAIQKVYEEAGPNDE 60 Query: 76 AIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMWNWRDASGSFTIQHLI 135 E+ R +L L++G DGYFFVYD G +++HPRQ G N D G I +LI Sbjct: 61 DAMEKVRAILTSLDYGRDGYFFVYDYNGNNVVHPRQLFRPGHNWLNLTDPDGDRVIANLI 120 Query: 136 ERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYLDDVEAALAQIDRQNS 195 +A++GGG RY W KPSS +A KL + + L +W W++GTG+YLDDV A A + Sbjct: 121 AKAKEGGGLHRYKWEKPSSHEMADKLSFAVGLDKWKWMLGTGVYLDDVYAQTAAANADFR 180 Query: 196 GYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQRVVRSQEEERARLSR 255 + T L+++ IA+ + + V +LLNL E R+AD KL++LAQR++ +QEEERARL+R Sbjct: 181 ANIRTTFLIVSLIAVPAVMLVFATCMLLNLRERRMADTKLKELAQRIIDTQEEERARLAR 240 Query: 256 DLHDGISQWLVSIKLQIEAA 275 +LHDGISQ LV ++ I+ A Sbjct: 241 ELHDGISQNLVGVRYAIDLA 260 >VC1276 [T] COG4564 Signal transduction histidine kinase Vch Vibrio cholerae Length = 451 Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 154/266 (57%), Gaps = 2/266 (0%) Query: 21 AIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLAQHALAHLYDTGRTDDA-IKE 79 +I+ + +QA L ++ A + + T L+ V++A A+ + + +A K+ Sbjct: 21 SISWISIHQAKTLGQREIEIFRAKLMEERETSLKDSVEVAFDAVRLIANNPNLSEAEAKQ 80 Query: 80 EARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMWNWRDASGSFTIQHLIERAR 139 + + +L ++ +G DGYFF YD G +++HP QPELVG +W +D G F IQ L+ +A+ Sbjct: 81 QVKAVLTNIRYGSDGYFFAYDAQGTNLVHPIQPELVGQNLWQLQDERGDFLIQALLFQAQ 140 Query: 140 QGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYLDDVEAALAQIDRQNSGYLH 199 GGGY +YLWRKPSS PKL Y L W W+IGTG+Y++D+ + ++ + + Sbjct: 141 SGGGYHQYLWRKPSSGETVPKLSYSAWLDDWEWMIGTGLYIEDLSHEVEKMQAAVNANID 200 Query: 200 QTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQRVVRSQEEERARLSRDLHD 259 T + I + + + + L +NL EHR+AD L+ L + V QE+E+ L+R+LHD Sbjct: 201 TTFFSVVVILIVTVAVIIVLTLAINLHEHRLADKNLKDLVHKTVLFQEDEKKHLARELHD 260 Query: 260 GISQWLVSIKLQIEAALVRLNGTPEQ 285 GI+Q LVS K +E +LN P+Q Sbjct: 261 GINQLLVSSKCHLELLANQLN-DPKQ 285 >VC0216 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 564 Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 13/227 (5%) Query: 1 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVE--AAYLASKNTELRHYVD 58 ++ R K++ L ++PL + TA+ + V YQ+ L++ Q+ + +K EL+ Y+ Sbjct: 10 LRSRTKLLLLTVIPLIV-ITALVMAVNYQS-GLSTLQKELENYRTDLIDAKKKELQAYLM 67 Query: 59 LAQHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSE 118 + A+ LY++ + + + +A+ +L + F DGYFF YD G + +H +PEL G Sbjct: 68 MGVTAVKPLYESDKAGEN-QAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKN 126 Query: 119 MWNWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGI 178 ++ +D +G I LI+ ++ G G+ + W KP+ APKLGY LP+W WV+GTGI Sbjct: 127 LYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGI 186 Query: 179 YLDDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNL 225 Y+DDV+ +A+ Q L+ ++ SA+ + + GL+ + Sbjct: 187 YIDDVDTQVAEFRAQREADLYDQMI--------SAIGLSVVGLVFTI 225