BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0232.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1582 [TK] COG2197 Response regulator containing a CheY-like ... 174 9e-44 AGpA383 [TK] COG2197 Response regulator containing a CheY-like r... 170 3e-42 VC1277 [TK] COG2197 Response regulator containing a CheY-like re... 159 4e-39 DR0987 [TK] COG2197 Response regulator containing a CheY-like re... 152 7e-37 BS_degU [TK] COG2197 Response regulator containing a CheY-like r... 132 5e-31 >BMEI1582 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bme Brucella melitensis Length = 213 Score = 174 bits (442), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 130/200 (65%), Gaps = 1/200 (0%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGING 72 R++L+D+HPLV DGLRA LET +++ A +A AL A A D+ LMDINM +NG Sbjct: 8 RVLLVDNHPLVLDGLRAVLETYDDIDIAGAASNARVALEMALAVNPDVVLMDINMPLLNG 67 Query: 73 IELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 I+ LF + P + +L+LSMHD EY+ SI GA GY+LKD + +IV AI V SGG Sbjct: 68 IDAIELFKRQLPNVRILMLSMHDSREYISTSIMRGASGYILKDVSTNEIVTAIHAVASGG 127 Query: 133 IYYSAALARQLTQPLPPR-ELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNI 191 Y+S+ ++ L + R E L+ RE +VL+ +A G SN++IA L +S TVETHR NI Sbjct: 128 TYFSSGVSEALLESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEATVETHRKNI 187 Query: 192 KRKLNIDGQAELIKFAVESR 211 K+KL I A L ++A+E+R Sbjct: 188 KKKLGIASTAGLTRYAIENR 207 >AGpA383 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 210 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/198 (47%), Positives = 131/198 (66%), Gaps = 1/198 (0%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGING 72 R++L+D+HPLV DGL+A LET + VV A A + AA A + + LMDINM ING Sbjct: 7 RVLLVDNHPLVLDGLKAVLETYEHIAVVGTAVSAMAGIDAAVATKPHVVLMDINMPQING 66 Query: 73 IELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 I+ LF R VL+LSMHD EY+ S+ GA GY+LKD +++IV AI+TV +GG Sbjct: 67 IDALELFKERQLSARVLMLSMHDSREYISTSVMYGAAGYILKDVATEEIVAAIDTVAAGG 126 Query: 133 IYYSAALARQLTQPLPPR-ELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNI 191 Y+S+ + L + R + LT RE++VL+ IA G+SN+ A LD++ RT+ETHR NI Sbjct: 127 TYFSSGVRDVLMESSTGRLKELTTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNI 186 Query: 192 KRKLNIDGQAELIKFAVE 209 KRKL+I A LI++A++ Sbjct: 187 KRKLDIATTAGLIRYAID 204 >VC1277 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 216 Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/202 (44%), Positives = 128/202 (63%), Gaps = 5/202 (2%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGING 72 R++++DDH +V DG ARLE P +EVVA A + EAL + D+ LMD++M +NG Sbjct: 10 RVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMNG 69 Query: 73 IELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 IE T L P VL+L+MHD EY+MQ +QAGA GY+LK+ + +V AI+TV G Sbjct: 70 IEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTVHQGA 129 Query: 133 IYY----SAALARQLTQPLPPR-ELLTQREREVLMHIANGESNKQIARELDLSVRTVETH 187 Y+ ++ L Q P+ + L++RE +L +A G S+K+IA L++S RTVETH Sbjct: 130 TYFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETH 189 Query: 188 RLNIKRKLNIDGQAELIKFAVE 209 R NIK KL+I AEL ++A++ Sbjct: 190 RQNIKHKLDIHSTAELAQYALQ 211 >DR0987 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Dra Deinococcus radiodurans Length = 239 Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/198 (41%), Positives = 121/198 (61%), Gaps = 7/198 (3%) Query: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 ++L+DDHP+VR G R LE L VV EAG +EALA A + D+ LMD++M G+NGI Sbjct: 28 LLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLTPDVILMDVSMPGMNGI 87 Query: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 E T A P + VL+L+ +D YV ++AGA GY+LK+A D++ A+ V +G Sbjct: 88 EATKAIKAEQPSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVAAGES 147 Query: 134 YYSAALARQL-------TQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVET 186 ++AR++ + P PP + L+ RE EVL A+G +NK+IAR+LD+S RTV+ Sbjct: 148 ALHPSIARKVLERFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLDISPRTVQV 207 Query: 187 HRLNIKRKLNIDGQAELI 204 H NI KL + + E + Sbjct: 208 HLANIFSKLGVGSRTEAV 225 >BS_degU [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bsu Bacillus subtilis Length = 229 Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 117/218 (53%), Gaps = 21/218 (9%) Query: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 I++IDDH L R+G++ L+ P EVVAE DEA D+ +MDINM +NG+ Sbjct: 6 IVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGV 65 Query: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 E T +PE V+ILS+HD YV +++ GARGY+LK+ + ++ A++ V GG Sbjct: 66 EATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGS 125 Query: 134 YYSAALARQLTQPL---------------------PPRELLTQREREVLMHIANGESNKQ 172 Y + L P +LT+RE EVL +A+G+SN+ Sbjct: 126 YLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRG 185 Query: 173 IARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVES 210 I L +S +TV+ H NI +K+N++ + + + A+++ Sbjct: 186 IGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223