BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0228.p         (324 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2314_1 [NT] COG0835 Chemotaxis signal transduction protein St...   258   1e-68
RSp0598_1 [NT] COG0835 Chemotaxis signal transduction protein Rs...   217   3e-56
STM2314_2 [T] COG0784 FOG Sty Salmonella typhimurium LT2              197   2e-50
RSp0598_2 [T] COG0784 FOG Rso Ralstonia solanacearum                  174   3e-43
VC2006_1 [NT] COG0835 Chemotaxis signal transduction protein Vch...   111   2e-24

>STM2314_1 [NT] COG0835 Chemotaxis signal transduction protein Sty Salmonella
           typhimurium LT2
          Length = 189

 Score =  258 bits (659), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 1/190 (0%)

Query: 1   MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60
           MDNFQK+ID+R NLT SN+FELLLFRLGT  H ++SELFGINVFK+REIVPMP  T+ AG
Sbjct: 1   MDNFQKDIDDRANLTLSNRFELLLFRLGTSLHEQKSELFGINVFKLREIVPMPAFTRPAG 60

Query: 61  TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120
            ++P+LGMVNIR Q+I VIDLPAV GC P+TGLNILL+TEYARS QAFAVESV+ I+RL+
Sbjct: 61  MKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYARSVQAFAVESVENIMRLD 120

Query: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLEKSA 180
           W QV +AE +  G ++TSIA LD +K+T+ LA VLDVEQIL++I+P+  DL+  +L K+ 
Sbjct: 121 WQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQILYDIVPSSHDLRATNL-KTN 179

Query: 181 SHGIRPGTVA 190
              I PG VA
Sbjct: 180 KFYITPGAVA 189


>RSp0598_1 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 166

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 130/166 (78%), Gaps = 4/166 (2%)

Query: 5   QKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAGTQSP 64
           Q+E+DERTNLT +N+FELLLFRLG     +R ELFGINVFK+REI+ MPPVT  A   + 
Sbjct: 3   QQEVDERTNLTNNNRFELLLFRLGESQRSQR-ELFGINVFKVREIMVMPPVTHVADAGAH 61

Query: 65  MLGMVNIRGQIISVIDLPAVVGCVPKTG-LNILLVTEYARSTQAFAVESVDEIVRLEWSQ 123
           +LG VN+RGQII VIDL +V+GC  K G  NILL+TEYARSTQ FAVE VDEIVRLEWSQ
Sbjct: 62  ILGAVNVRGQIIPVIDLASVIGC--KNGNANILLITEYARSTQGFAVEEVDEIVRLEWSQ 119

Query: 124 VLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDR 169
           +  AE S G A +TS+ARLD + D SRLAQV+DVEQIL ++ PT R
Sbjct: 120 IFPAEASVGSANITSLARLDGNADNSRLAQVIDVEQILVDVFPTRR 165


>STM2314_2 [T] COG0784 FOG Sty Salmonella typhimurium LT2
          Length = 144

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 114/134 (85%)

Query: 191 IAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAEGRPISDKISFVLT 250
           I A+DSKVAR+++E+GL AM IP++MHVTGK+AWE+IQ+LA+EA AEG+PIS+KI+ VLT
Sbjct: 1   IVAEDSKVARAMLEKGLNAMGIPHQMHVTGKDAWERIQQLAQEAEAEGKPISEKIALVLT 60

Query: 251 DLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGGDAYVAKFEANELA 310
           DLEMPEMDGFTLTR IK ++ LK IPV+IHSSLSGSANEDH+R V  D YVAKFE NEL+
Sbjct: 61  DLEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHIRKVKADGYVAKFEINELS 120

Query: 311 ATIYGVLDKAGVKA 324
           + I  VL++A   +
Sbjct: 121 SVIQEVLERAATNS 134


>RSp0598_2 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 147

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 99/132 (75%)

Query: 186 PGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAEGRPISDKI 245
           PG   + ADDS +ARSLI  GL AM  P+ M  +G+EAW+ +Q +AR+A  EG+ + DKI
Sbjct: 15  PGAKLLVADDSGLARSLIANGLEAMGAPFVMTKSGQEAWDTLQNIARDAAREGKTVRDKI 74

Query: 246 SFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGGDAYVAKFE 305
           + VLTDLEMPEMDGFTLTR IK E   +SIPV+IHSSLSGSANEDHVR VG + YVAKFE
Sbjct: 75  ALVLTDLEMPEMDGFTLTRKIKSEPAFQSIPVVIHSSLSGSANEDHVRRVGANGYVAKFE 134

Query: 306 ANELAATIYGVL 317
           ANELA  I   L
Sbjct: 135 ANELAQAIVSAL 146


>VC2006_1 [NT] COG0835 Chemotaxis signal transduction protein Vch Vibrio
           cholerae
          Length = 184

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 108/184 (58%), Gaps = 13/184 (7%)

Query: 1   MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60
           M      +D+RTNL   N+ ELLLF L +       ++F INVFK+RE++ +P +TK  G
Sbjct: 1   MSGVLNTVDQRTNLVGENRLELLLFSLNS------RQIFAINVFKVREVIKVPLLTKMPG 54

Query: 61  TQSPMLGMVNIRGQIISVIDLPAVVGCVPK----TGLNILLVTEYARSTQAFAVESVDEI 116
           +   + G+ ++RG+ + VIDL + +G  P+    T  N L++TEY R+ Q F V  V  I
Sbjct: 55  SHPHITGVASLRGEPVPVIDLRSAIGFPPRRVQDTEQN-LIITEYNRTIQGFLVGQVRNI 113

Query: 117 VRLEWSQVLSAETSSGGA-FVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMES 175
           +   W+++     S+G A ++T+   +  ++D + + +++DVE++L EI+  D  +  E 
Sbjct: 114 INTAWTEIQPPPKSAGRANYLTAFTHV-KEQDKTHIVEIIDVEKVLAEIVHYDASISKEV 172

Query: 176 LEKS 179
           L++S
Sbjct: 173 LDES 176