BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0224.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0314 [TK] COG0745 Response regulators consisting of a CheY-li... 193 2e-49 all4727 [TK] COG0745 Response regulators consisting of a CheY-li... 149 4e-36 sll0649 [TK] COG0745 Response regulators consisting of a CheY-li... 147 3e-35 Cgl2904 [TK] COG0745 Response regulators consisting of a CheY-li... 144 2e-34 all3822 [TK] COG0745 Response regulators consisting of a CheY-li... 141 1e-33 >RSp0314 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 256 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 113/225 (50%), Positives = 141/225 (62%), Gaps = 1/225 (0%) Query: 6 ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65 ILI ED+ + ADIL AYL R G ++ AADG +ALEL+ +PDLVLLDV +P + G + Sbjct: 29 ILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVLLDVQMPHVDGWKA 88 Query: 66 LAAIRQHASTAVIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRMLRPI 125 L+ IR T VIM+TA+ + L GADDYVVKP++P EVVAR AVLRR + Sbjct: 89 LSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRRSMSG- 147 Query: 126 SGAPQQAVLRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSRAEL 185 +G Q VLR +D D ATV AL LT TE LLA + AP R+FSRAEL Sbjct: 148 TGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHALALTLTEFKLLAQLARAPKRVFSRAEL 207 Query: 186 LAHSQPESDAMERVVDAHLHNLRRKLEQAGIREVVVTVRGLGYRF 230 LA PE D +ER VD+H+ LR+KLE G+ + V VRG+GYR Sbjct: 208 LAACLPEGDTLERTVDSHISKLRKKLEDLGVNGMPVGVRGVGYRL 252 >all4727 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 238 Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 136/233 (58%), Gaps = 9/233 (3%) Query: 6 ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65 ILIVED+ + A ++ L +EGF R + DG AL+++ PDL++LD+M+PGL G EV Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEV 62 Query: 66 LAAIRQHASTA---VIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRML 122 A IRQ ++M+TA ++ + L GADDY+VKP+ P E+VARV A+LRR L Sbjct: 63 CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRSL 122 Query: 123 RPISGAPQQAVLRHGALTLDPDAALATVDKDGH-PQALTLTRTELNLLALMMAAPTRMFS 181 R Q V R +D D A+ D H P+AL LT E NLL+ ++ P R+++ Sbjct: 123 R---QGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWN 179 Query: 182 RAELLAHSQPES-DAMERVVDAHLHNLRRKLEQAGIR-EVVVTVRGLGYRFRN 232 R +L+ ++ ERVVD H+ LR+K+E + TV G+GY+F + Sbjct: 180 RTQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFED 232 >sll0649 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Syn Synechocystis Length = 245 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 129/234 (55%), Gaps = 7/234 (2%) Query: 6 ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65 ILIVEDD + A ++ L RE F DG L +++ PDL++LD+MLP L G EV Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 66 LAAIRQHASTA---VIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRML 122 IRQ + ++M+TA ++ I L GADDY+VKP+ P E+VARV A+LRR L Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 123 RPISGAPQQAVLRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSR 182 R G P + R +D D A+ + + L LT E NLLA M+ P R+++R Sbjct: 134 R--QGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191 Query: 183 AELLAH-SQPESDAMERVVDAHLHNLRRKLEQAGIREVVV-TVRGLGYRFRNPS 234 +L+ + ERVVD H+ LR+K+E + TV GLGY+F +P Sbjct: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >Cgl2904 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Cgl Corynebacterium glutamicum Length = 240 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 4 GRILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGN 63 GR+L+V+D+ A ++ +YL R GF TRQA G QA++ RR+ PD+V+LD+ LP L G Sbjct: 13 GRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGL 72 Query: 64 EVLAAIRQHASTAVIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRMLR 123 EV IR + ++M+TA + I+ L GADDY+ KP+ E+V RVHAVLRR R Sbjct: 73 EVCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRP-R 131 Query: 124 PISGAPQQAV-LRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSR 182 + PQ L G L LDP A V + + LTRTE LL + P ++ +R Sbjct: 132 TSTTPPQVTTPLIVGDLILDPVAHQVWVGE----TTVELTRTEFELLVALALRPGQVLTR 187 Query: 183 AELLAHSQPESDAM-ERVVDAHLHNLRRKL-EQAGIREVVVTVRGLGYRFRNP 233 +L+ + ER+VD H+ NLRRKL R + TVRG+GYR P Sbjct: 188 HDLITEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRVGQP 240 >all3822 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 242 Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 130/234 (55%), Gaps = 9/234 (3%) Query: 3 KGRILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSG 62 K +IL+V+D+ IL+ L+ G+ A DG +AL+ +R+ PDLV+LDVM+P L G Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDG 64 Query: 63 NEVLAAIRQHASTAVIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRML 122 V +R+ + +IM+TA+ D I L GADDYVVKP+ P E+ AR+ +VLRR+ Sbjct: 65 YGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 124 Query: 123 RP-ISGAPQQAVLRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFS 181 + SG P V+ G + +D + + + LT E +LL L+++ FS Sbjct: 125 KTGASGIPSSGVIHVGNIKIDTNKRQVY----KGDERIRLTGMEFSLLELLVSRSGEAFS 180 Query: 182 RAELLAH---SQPESDAMERVVDAHLHNLRRKLEQAGIR-EVVVTVRGLGYRFR 231 R+E+L PE RVVD H+ LR KLE E+++T RG GY F+ Sbjct: 181 RSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234