BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0210.p (455 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1064 [R] COG1159 GTPase Rso Ralstonia solanacearum 325 1e-88 NMA0889 [R] COG1159 GTPase NmA Neisseria meningitidis Z2491 256 7e-68 NMB0687 [R] COG1159 GTPase Nme Neisseria meningitidis MC58 256 1e-67 RSc1065 [L] COG1381 Recombinational DNA repair protein (RecF pat... 248 2e-65 XF2247 [R] COG1159 GTPase Xfa Xylella fastidiosa 9a5c 247 5e-65 >RSc1064 [R] COG1159 GTPase Rso Ralstonia solanacearum Length = 298 Score = 325 bits (833), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 157/258 (60%), Positives = 199/258 (77%), Gaps = 3/258 (1%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 +RCG +AIVGRPNVGKSTLMN LVG KVSITSRKAQTTRHRITGIQT ++ Q+V+VDTPG Sbjct: 5 FRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPG 64 Query: 74 FQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLNKA 133 FQTRH+ ALN++LNR VT+TLT+ D +LFV+EAG +GP D +VL LLP P IL++NK Sbjct: 65 FQTRHATALNRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVLSLLPRETPVILIVNKV 124 Query: 134 DRNKDKT---TLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDED 190 DR T + F +E+A F +VP+SAK R + RL VR LP+ PM+D + Sbjct: 125 DRLDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKNRDDILRLLGIVRPYLPEGEPMYDPE 184 Query: 191 DITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDNHKA 250 +TDRSE+FLA+EIVREKVFR+ G+ELPY+STV+++KFE EG LRR+F ILV+RD HKA Sbjct: 185 ALTDRSERFLAAEIVREKVFRWTGDELPYSSTVVVDKFETEGRLRRVFVTILVDRDAHKA 244 Query: 251 MVIGQKGARAKRPHSKLR 268 M+IG KGA+ K+ ++ R Sbjct: 245 MIIGAKGAKLKQISTEAR 262 >NMA0889 [R] COG1159 GTPase NmA Neisseria meningitidis Z2491 Length = 307 Score = 256 bits (655), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 136/257 (52%), Positives = 187/257 (72%), Gaps = 2/257 (0%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 YRCG++AIVGRPNVGKSTLMN L+G K+SITS+KAQTTR+R+TGI T + Q+V+VDTPG Sbjct: 16 YRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPG 75 Query: 74 FQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLNKA 133 FQT H NALN LN+ VT L DV++FV+EA F AD+ VL LP + P ILV+NK Sbjct: 76 FQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTPVILVVNKI 135 Query: 134 DRN--KDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 191 D++ KD+ L F +V + +FAA VSAK ++ L E ++ LP++ PM+ ED Sbjct: 136 DKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDM 195 Query: 192 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDNHKAM 251 +TD+S +FLA EIVREK+FR++GEELPY V +E+FE+E L RI+ A+LV++++ KA+ Sbjct: 196 VTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAI 255 Query: 252 VIGQKGARAKRPHSKLR 268 +IG+ G R K+ ++ R Sbjct: 256 LIGKGGERLKKISTEAR 272 >NMB0687 [R] COG1159 GTPase Nme Neisseria meningitidis MC58 Length = 324 Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 136/257 (52%), Positives = 187/257 (72%), Gaps = 2/257 (0%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 YRCG++AIVGRPNVGKSTLMN L+G K+SITS+KAQTTR+R+TGI T + Q+V+VDTPG Sbjct: 33 YRCGFVAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPG 92 Query: 74 FQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLLPANVPCILVLNKA 133 FQT H NALN LN+ VT L DV++FV+EA F AD+ VL LP + P ILV+NK Sbjct: 93 FQTDHRNALNDRLNQNVTEALGGVDVVVFVVEAMRFTDADRVVLKQLPKHTPVILVVNKI 152 Query: 134 DRN--KDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 191 D++ KD+ L F +V + +FAA VSAK ++ L E ++ LP++ PM+ ED Sbjct: 153 DKDKAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDM 212 Query: 192 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDNHKAM 251 +TD+S +FLA EIVREK+FR++GEELPY V +E+FE+E L RI+ A+LV++++ KA+ Sbjct: 213 VTDKSARFLAMEIVREKLFRYLGEELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAI 272 Query: 252 VIGQKGARAKRPHSKLR 268 +IG+ G R K+ ++ R Sbjct: 273 LIGKGGERLKKISTEAR 289 >RSc1065 [L] COG1381 Recombinational DNA repair protein (RecF pathway) Rso Ralstonia solanacearum Length = 272 Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/285 (50%), Positives = 170/285 (59%), Gaps = 37/285 (12%) Query: 190 DDITDRSEKFLASEIVREKVFR-----------------FVGEELPYTSTVLIEKFEQEG 232 D I D + ++LA E V R FV PY T LI Sbjct: 6 DPIPDEAAEWLAEEGVAGAAPRKGFPAARAEHRVSQQPAFVLHSYPYRETSLI------- 58 Query: 233 NLRRIFAAILVERDNHKAMVIGQKGARAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTD 292 I V +H + + KGA KRPHS LR LQTFQPLSLSWSG+ EV+TLT Sbjct: 59 --------IDVFTRDHGRIALVAKGA--KRPHSALRAVLQTFQPLSLSWSGRGEVKTLTR 108 Query: 293 AEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLR 352 AEWVGG+LPL LL GFYLNELLVK +ARED HP LF HYV TLNKLAHGE LR Sbjct: 109 AEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDGHPVLFSHYVETLNKLAHGEPVAFTLR 168 Query: 353 QFERILLKQTGVAGNWSHCVASGKTVRPDLIYVVDPEQGTRPERLSDRA--PKVSGKTLL 410 FER+LL++TG A CV G+ V+PD YV PE+G R SD + P + G+TLL Sbjct: 169 AFERVLLRETGFAAQLDRCV-DGEPVQPDGDYVYHPERGIRRALPSDPSSWPVLRGQTLL 227 Query: 411 DMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 455 DMER+DYS P T QS+ LMR+LL +HL G L+TRQILIDL +L Sbjct: 228 DMERDDYSRPATATQSRSLMRFLLHYHLHGTPLSTRQILIDLQKL 272 >XF2247 [R] COG1159 GTPase Xfa Xylella fastidiosa 9a5c Length = 298 Score = 247 bits (630), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 127/260 (48%), Positives = 167/260 (64%), Gaps = 1/260 (0%) Query: 14 YRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPG 73 YRCG IA++GRPNVGKSTL N LVG K+SI S + QTTRHR+ GI T Q V VDTPG Sbjct: 7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPG 66 Query: 74 FQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLDLL-PANVPCILVLNK 132 + +N+ +NRT +L D L V E+ + D +LL +P +LV+NK Sbjct: 67 LHREQKHPMNRLMNRTARGSLEDVDAALLVTESTHWNEEDTLAYNLLNDTGIPVVLVINK 126 Query: 133 ADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDDI 192 DR KDK+ L+PF + +H F + PVSA +R L+ L ++ LLP+ PMF ED+I Sbjct: 127 IDRFKDKSALLPFLTHINENHTFTTIHPVSALKRKGLETLVSDLLALLPEGDPMFSEDEI 186 Query: 193 TDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDNHKAMV 252 TDRS++FLASE+VRE+V R +GEELPY +TV IE F + L RI A I VER++ KA+V Sbjct: 187 TDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFTENTGLFRIGALIWVERESQKAIV 246 Query: 253 IGQKGARAKRPHSKLRGALQ 272 IG+ GAR K K R ++ Sbjct: 247 IGKGGARLKEIGVKARQQME 266