BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0208.p         (168 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1063 [K] COG0571 dsRNA-specific ribonuclease Rso Ralstonia so...   197   8e-51
rnc [K] COG0571 dsRNA-specific ribonuclease Eco Escherichia coli...   157   8e-39
Zrnc [K] COG0571 dsRNA-specific ribonuclease EcZ Escherichia col...   157   8e-39
ECs3433 [K] COG0571 dsRNA-specific ribonuclease Ecs Escherichia ...   157   8e-39
STM2581 [K] COG0571 dsRNA-specific ribonuclease Sty Salmonella t...   156   2e-38

>RSc1063 [K] COG0571 dsRNA-specific ribonuclease Rso Ralstonia solanacearum
          Length = 256

 Score =  197 bits (502), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/131 (73%), Positives = 110/131 (83%)

Query: 1   MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60
           M  + LQQRLG+ F    LLQQALTHRSH+A+HNERLEFLGDS+LNC VA +L+  + K+
Sbjct: 1   MSLEALQQRLGYRFSKPELLQQALTHRSHNAMHNERLEFLGDSILNCAVADMLYGMFGKL 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSR+RANLVKQQ+LYEIAQ L L   LRLGEGELKSGGFRRPSILAD LEA+FGA+
Sbjct: 61  DEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIFGAV 120

Query: 121 FLDSGFEAARA 131
           FLD GF+AAR 
Sbjct: 121 FLDGGFDAART 131


>rnc [K] COG0571 dsRNA-specific ribonuclease Eco Escherichia coli K12
          Length = 226

 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 98/124 (79%)

Query: 6   LQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 65
           LQ++LG+TF    LLQQALTHRS S+ HNERLEFLGDS+L+ V+A+ L+ R+ ++DEGD+
Sbjct: 9   LQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDM 68

Query: 66  SRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDSG 125
           SR+RA LV+  +L E+A+  EL + LRLG GELKSGGFRR SILADT+EAL G +FLDS 
Sbjct: 69  SRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSD 128

Query: 126 FEAA 129
            +  
Sbjct: 129 IQTV 132


>Zrnc [K] COG0571 dsRNA-specific ribonuclease EcZ Escherichia coli
           O157:H7 EDL933
          Length = 226

 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 98/124 (79%)

Query: 6   LQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 65
           LQ++LG+TF    LLQQALTHRS S+ HNERLEFLGDS+L+ V+A+ L+ R+ ++DEGD+
Sbjct: 9   LQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDM 68

Query: 66  SRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDSG 125
           SR+RA LV+  +L E+A+  EL + LRLG GELKSGGFRR SILADT+EAL G +FLDS 
Sbjct: 69  SRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSD 128

Query: 126 FEAA 129
            +  
Sbjct: 129 IQTV 132


>ECs3433 [K] COG0571 dsRNA-specific ribonuclease Ecs Escherichia coli
           O157:H7
          Length = 226

 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 98/124 (79%)

Query: 6   LQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 65
           LQ++LG+TF    LLQQALTHRS S+ HNERLEFLGDS+L+ V+A+ L+ R+ ++DEGD+
Sbjct: 9   LQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDM 68

Query: 66  SRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDSG 125
           SR+RA LV+  +L E+A+  EL + LRLG GELKSGGFRR SILADT+EAL G +FLDS 
Sbjct: 69  SRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSD 128

Query: 126 FEAA 129
            +  
Sbjct: 129 IQTV 132


>STM2581 [K] COG0571 dsRNA-specific ribonuclease Sty Salmonella typhimurium
           LT2
          Length = 226

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 98/124 (79%)

Query: 6   LQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 65
           LQ++LG+TF    LLQQALTHRS S+ HNERLEFLGDS+L+ V+A+ L+ R+ ++DEGD+
Sbjct: 9   LQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSFVIANALYHRFPRVDEGDM 68

Query: 66  SRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDSG 125
           SR+RA LV+  +L E+A+  +L + LRLG GELKSGGFRR SILADT+EAL G +FLDS 
Sbjct: 69  SRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSN 128

Query: 126 FEAA 129
            +  
Sbjct: 129 IQTV 132