BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0121.p         (201 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0944 Non COG                                                       176   3e-44
PM0119 [S] COG3028 Uncharacterized protein conserved in bacteria...   127   1e-29
VC2536 [S] COG3028 Uncharacterized protein conserved in bacteria...   126   3e-29
NMA1049 [S] COG3028 Uncharacterized protein conserved in bacteri...   119   4e-27
PA4473 [S] COG3028 Uncharacterized protein conserved in bacteria...   119   5e-27

>RSc0944 Non COG
          Length = 208

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 127/178 (71%), Gaps = 9/178 (5%)

Query: 24  SKSQLKREMDALQKLGESLVNEPRDRVKRVPMPEDVREAILECQQIKDHEGRRRQMQYVG 83
           SKSQ KRE+ ALQ LG +L   P+DR+ +VP+PE + +A+ E ++I  HEG+RRQMQY+G
Sbjct: 34  SKSQRKREVTALQDLGTALEALPKDRLAKVPLPETLADALREARRITSHEGKRRQMQYIG 93

Query: 84  KKMRTLEADEIAIIQKTIDSWHGASKAETAAMHALERRREKLLADDQALTELLNRHPEVD 143
           K MR L  D+I  I++ + ++ GASKAETA +HA+ER R++LLADD A+TE +  HP+ D
Sbjct: 94  KLMRALTDDDIEAIRRVLATFVGASKAETARLHAIERWRDRLLADDGAITEFIAAHPDTD 153

Query: 144 VQHMRTLIRNARKEQAENKPPKAYREIFQILKQLQTQAALA----KGEAAEQADDEQD 197
           VQ +RTL+RNARKE    KPPK+ RE+FQ +KQ     ALA     GE AE ++ E D
Sbjct: 154 VQALRTLVRNARKEAQLGKPPKSSRELFQAVKQ-----ALAGHDQAGEDAEPSNLEDD 206


>PM0119 [S] COG3028 Uncharacterized protein conserved in bacteria Pmu
           Pasteurella multocida
          Length = 180

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 107/152 (70%), Gaps = 4/152 (2%)

Query: 24  SKSQLKREMDALQKLGESLVNEPRDRVKRVPMPEDVREAILECQQIKDHEGRRRQMQYVG 83
           SKS++KR+ +AL+KLGE LV+  + +++++P+ E + EAI   Q+++  E RRRQ+QY+G
Sbjct: 27  SKSEIKRDAEALKKLGEKLVDLTKAKLEKIPLEEKLLEAIELAQRLQ-KEARRRQLQYIG 85

Query: 84  KKMRTLEADEIAIIQKTIDSWHGASKAETAAMHALERRREKLLADDQALTELLNRHPEVD 143
           K +R ++ + I   Q  ++      + + A +H LE  R+ L+ + +A+T+ L +HP+ D
Sbjct: 86  KLLRNIDVEPI---QDALEKLENKHQQQQAMLHKLEMLRDTLIDNPEAITQFLEQHPDAD 142

Query: 144 VQHMRTLIRNARKEQAENKPPKAYREIFQILK 175
            QH+R L+R A+KE+A+NKPPKAYREIFQ LK
Sbjct: 143 RQHLRNLVRAAQKEKAQNKPPKAYREIFQYLK 174


>VC2536 [S] COG3028 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 193

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 114/178 (64%), Gaps = 9/178 (5%)

Query: 24  SKSQLKREMDALQKLGESLVNEPRDRVKRVPMPEDVREAILECQQIKDHEGRRRQMQYVG 83
           S+++LK +M ALQKLGE LV      + + P+PED+ EAI + Q+ K+ E RRRQ+QY+G
Sbjct: 24  SRTELKNDMLALQKLGEELVELKPSALAKFPLPEDLAEAIKDAQRFKN-EARRRQLQYIG 82

Query: 84  KKMRTLEADEIAIIQKTIDSWHGASKAETAAMHALERRREKLLAD-DQALTELLNRHPEV 142
           K MR ++ + +   Q  +D         TA +H LE+ R++++A+ D A+   + ++PE 
Sbjct: 83  KLMRHIDPEPL---QAALDKLRNKHSQTTALLHKLEQLRDRIVAEGDSAIEVAMEQYPEA 139

Query: 143 DVQHMRTLIRNARKEQAENKPPKAYREIFQILKQLQTQAALAKGEAAEQADDEQDGDE 200
           D Q +R L R A KE+A NKPPK+ REIFQ+LK    +A LAK E  E+++D+ D  E
Sbjct: 140 DRQRLRLLARQASKEKAGNKPPKSSREIFQLLK----EAMLAKQEIEEESEDDLDSAE 193


>NMA1049 [S] COG3028 Uncharacterized protein conserved in bacteria NmA
           Neisseria meningitidis Z2491
          Length = 191

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 99/162 (61%), Gaps = 3/162 (1%)

Query: 16  FEQEYDRPSKSQLKREMDALQKLGESLVNEPRDRVKRVPMPEDVREAILECQQIKDHEGR 75
           FEQE +  SK+Q+K++M+ LQ LG  L     D +K++ + ED+ EA++  ++I  +   
Sbjct: 23  FEQEDEWISKTQMKKQMNGLQDLGMELTKLSNDTLKKIGLDEDLYEAVVTYKKITSNGAL 82

Query: 76  RRQMQYVGKKMRTLEADEIAIIQKTIDSWHGASKAETAAMHALERRREKLLADDQALTEL 135
           +RQ Q++G+ MR  +    A I+  +    G   A  A +  +E+ R +LLADD ALT+ 
Sbjct: 83  KRQAQFIGRLMRDTDP---APIEAFLAKLRGDDAAHNAFLQRVEQARVRLLADDGALTQF 139

Query: 136 LNRHPEVDVQHMRTLIRNARKEQAENKPPKAYREIFQILKQL 177
           ++  P  D   +RTLIRN +KEQ +NKPPK +R +FQ LK +
Sbjct: 140 MSDFPHADAGKLRTLIRNTKKEQEQNKPPKNFRALFQELKTV 181


>PA4473 [S] COG3028 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 200

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 104/165 (63%), Gaps = 8/165 (4%)

Query: 14  SEFEQEYDRPSKSQLKREMDALQKLGESLVNEPRDRVKRVPMPEDVREAILECQQIKDHE 73
           S+FE++    SKSQ+KRE+ ALQ LGE L       ++R+P+ + +R+A+LE  + K H 
Sbjct: 35  SQFEEK----SKSQIKRELHALQDLGERLTTLQPQLLERLPLTDPLRKALLEAPKHKAHI 90

Query: 74  GRRRQMQYVGKKMRTLEADEIAIIQKTIDSWHGASKAETAAMHALERRREKLLA-DDQAL 132
            R+R +QY+GK MR  + D I  +   +DS   +++      HALER R++L+A  D AL
Sbjct: 91  ARKRHIQYIGKLMRDQDVDAIVALIDQVDS---STRQYNERFHALERWRDQLIAGGDAAL 147

Query: 133 TELLNRHPEVDVQHMRTLIRNARKEQAENKPPKAYREIFQILKQL 177
              +   PE D QH+R L+R+A+ E A NKPP A R++F+ +++L
Sbjct: 148 DAFVGEFPECDRQHLRGLVRHAQHEAAHNKPPAAARKVFKYIREL 192