BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0111.p (310 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 479 e-135 Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 439 e-123 ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 439 e-123 yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 438 e-123 STM0851 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 415 e-116 >RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 299 Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/293 (80%), Positives = 262/293 (89%), Gaps = 2/293 (0%) Query: 20 PAV--AASGQKIRTPWREFWRKFKKQHLAVYAGVFILFLVAVAILAPWIVPFDPENFFDY 77 PAV A+ + +RTPW EFWRKF+KQHLA+ AGVF++ LV AILAP +VPFDPEN+FDY Sbjct: 7 PAVIPQAASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVAAILAPHLVPFDPENYFDY 66 Query: 78 DALNSPPTWVHWFGVDSLGRDIFSRIVMGTRISLAAGFFSVAIGAVIGTVFGLLAGYYEG 137 DALN+ P+ HWFGVDSLGRDIFSRI+MGTRISL AGF SV IGA+IGTV GLLAGYYEG Sbjct: 67 DALNAGPSAAHWFGVDSLGRDIFSRILMGTRISLEAGFVSVVIGALIGTVLGLLAGYYEG 126 Query: 138 WWDRITMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLK 197 WWDRI MRICDVLFAFPGILLAIGIVAILG GM NVI +V+VFS+PAFARLVRGNTL LK Sbjct: 127 WWDRIVMRICDVLFAFPGILLAIGIVAILGNGMANVIFAVAVFSVPAFARLVRGNTLMLK 186 Query: 198 NLTYIEATRSIGASDMTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPT 257 +LTY+EA RSIGASD TI+ +HI PGTIS+IVVYF+MRIGTSIITAA LSFLGLGAQ PT Sbjct: 187 HLTYVEAARSIGASDRTILLRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPT 246 Query: 258 PEWGLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 310 PEWG MLNEARADMVT+PHVA+ PS+AIFLTVLAFNLLGDGLRDALDPKID+R Sbjct: 247 PEWGAMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDRR 299 >Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/282 (73%), Positives = 247/282 (87%) Query: 27 QKIRTPWREFWRKFKKQHLAVYAGVFILFLVAVAILAPWIVPFDPENFFDYDALNSPPTW 86 ++RTPW EFWR+F++QH+A+ A +F++ L+ VAI A WI P+D EN+FDYD LN+ P+ Sbjct: 21 DQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSL 80 Query: 87 VHWFGVDSLGRDIFSRIVMGTRISLAAGFFSVAIGAVIGTVFGLLAGYYEGWWDRITMRI 146 HWFGVDSLGRDIFSR+++G +ISLAAG F+V IGA IGT+ GLLAGYYEGWWDR+ MRI Sbjct: 81 QHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRI 140 Query: 147 CDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIEATR 206 CDVLFAFPGILLAI +VA+LG G+ NVII+V++FSIPAFARLVRGNTL LK T+IE+ R Sbjct: 141 CDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200 Query: 207 SIGASDMTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNE 266 SIGASDMTI+ +HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLGAQ PTPEWG MLNE Sbjct: 201 SIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNE 260 Query: 267 ARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 308 ARADMV +PHVA+ P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 261 ARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 303 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/282 (73%), Positives = 247/282 (87%) Query: 27 QKIRTPWREFWRKFKKQHLAVYAGVFILFLVAVAILAPWIVPFDPENFFDYDALNSPPTW 86 ++RTPW EFWR+F++QH+A+ A +F++ L+ VAI A WI P+D EN+FDYD LN+ P+ Sbjct: 21 DQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSL 80 Query: 87 VHWFGVDSLGRDIFSRIVMGTRISLAAGFFSVAIGAVIGTVFGLLAGYYEGWWDRITMRI 146 HWFGVDSLGRDIFSR+++G +ISLAAG F+V IGA IGT+ GLLAGYYEGWWDR+ MRI Sbjct: 81 QHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRI 140 Query: 147 CDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIEATR 206 CDVLFAFPGILLAI +VA+LG G+ NVII+V++FSIPAFARLVRGNTL LK T+IE+ R Sbjct: 141 CDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200 Query: 207 SIGASDMTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNE 266 SIGASDMTI+ +HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLGAQ PTPEWG MLNE Sbjct: 201 SIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNE 260 Query: 267 ARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 308 ARADMV +PHVA+ P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 261 ARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 303 Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust. Identities = 206/282 (73%), Positives = 247/282 (87%) Query: 27 QKIRTPWREFWRKFKKQHLAVYAGVFILFLVAVAILAPWIVPFDPENFFDYDALNSPPTW 86 ++RTPW EFWR+F++QH+A+ A +F++ L+ VAI A WI P+D EN+FDYD LN+ P+ Sbjct: 21 DQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSL 80 Query: 87 VHWFGVDSLGRDIFSRIVMGTRISLAAGFFSVAIGAVIGTVFGLLAGYYEGWWDRITMRI 146 HWFGVDSLGRDIFSR+++G +ISLAAG F+V IGA IGT+ GLLAGYYEGWWDR+ MRI Sbjct: 81 QHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRI 140 Query: 147 CDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIEATR 206 CDVLFAFPGILLAI +VA+LG G+ NVII+V++FSIPAFARLVRGNTL LK T+IE+ R Sbjct: 141 CDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200 Query: 207 SIGASDMTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNE 266 SIGASDMT++ +HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLGAQ PTPEWG MLNE Sbjct: 201 SIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNE 260 Query: 267 ARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 308 ARADMV +PHVA+ P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 261 ARADMVIAPHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >STM0851 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sty Salmonella typhimurium LT2 Length = 303 Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/282 (74%), Positives = 248/282 (87%) Query: 27 QKIRTPWREFWRKFKKQHLAVYAGVFILFLVAVAILAPWIVPFDPENFFDYDALNSPPTW 86 +IRTPWREFWR+F++QH+A+ AG F+L L+ VAI A W+ P+D EN+FDYD+LN+ P+ Sbjct: 21 DQIRTPWREFWRRFRRQHVALVAGGFVLALILVAIFARWLTPYDAENYFDYDSLNNGPSL 80 Query: 87 VHWFGVDSLGRDIFSRIVMGTRISLAAGFFSVAIGAVIGTVFGLLAGYYEGWWDRITMRI 146 HWFGVDSLGRDIFSR+++G +ISLAAG F+V IGA+IGTV GLLAGYYEGWWDR MRI Sbjct: 81 QHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAIIGTVLGLLAGYYEGWWDRFIMRI 140 Query: 147 CDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIEATR 206 CDVLFAFPGILLAI +VA+LG G+ NVI++V++FSIPAFARLVRGNTL LK T+IE+ R Sbjct: 141 CDVLFAFPGILLAIAVVAVLGSGIANVIVAVAIFSIPAFARLVRGNTLVLKQQTFIESAR 200 Query: 207 SIGASDMTIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNE 266 SIGASD TI++ HI PGT+S+IVV+FTMRIGTSII+AA LSFLGLGAQ PTPEWG MLNE Sbjct: 201 SIGASDTTILFSHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNE 260 Query: 267 ARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPKID 308 ARADMV +PHVAL P++AIFLTVLAFNLLGDGLRDALDPKI Sbjct: 261 ARADMVIAPHVALFPAVAIFLTVLAFNLLGDGLRDALDPKIK 302