BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0107.p         (101 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0002 [J] COG0594 RNase P protein component Rso Ralstonia sola...    70   1e-12

>RSc0002 [J] COG0594 RNase P protein component Rso Ralstonia solanacearum
          Length = 131

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 1   VHRTEHFVLYARRNSLTQARLGVVAAKRLAPRAVTRNTIKRATRELF--RQAELPAVDCI 58
           V R+ HFVLY R N   QARLG+V  K+ A RAV RN IKR  RELF  RQA L   D +
Sbjct: 15  VRRSRHFVLYVRANGHPQARLGIVIGKKFARRAVERNLIKRQCRELFRLRQAALGGRDVL 74

Query: 59  VRLSRPVNARRDPARSAALKAMLHAELRQLF 89
           +RL      R D    AA K +   EL  LF
Sbjct: 75  IRLQTKF-PREDVPTVAAFKRLCREELSYLF 104