BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0088.p         (234 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0287 [J] COG0018 Arginyl-tRNA synthetase Rso Ralstonia solana...   295   7e-80
XF0147 [J] COG0018 Arginyl-tRNA synthetase Xfa Xylella fastidios...   226   4e-59
BH3808 [J] COG0018 Arginyl-tRNA synthetase Bha Bacillus halodurans    145   7e-35
lin2706 [J] COG0018 Arginyl-tRNA synthetase Lin Listeria innocua      144   2e-34
BS_argS [J] COG0018 Arginyl-tRNA synthetase Bsu Bacillus subtilis     136   3e-32

>RSc0287 [J] COG0018 Arginyl-tRNA synthetase Rso Ralstonia solanacearum
          Length = 600

 Score =  295 bits (754), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 140/175 (80%), Positives = 158/175 (90%)

Query: 8   RXRARGFKPGDAEWPESAYNGDYIADIARDFLDKKTVSASDGEPVTGSGEVDDIESIRRF 67
           + RARGFKPGD  WPE+AYNGDYIADIA D+L  KTV ASDGEPVTG+ +V++IE+IRRF
Sbjct: 184 QARARGFKPGDTGWPEAAYNGDYIADIAADYLAGKTVRASDGEPVTGARDVENIEAIRRF 243

Query: 68  AVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALIAAGKTYEQDGALWLRTT 127
           AV YLR+EQD+DLQAFGVKFD+YYLESSLYADGKV   VDALIAAGKTYEQ+GALWLRTT
Sbjct: 244 AVTYLRNEQDIDLQAFGVKFDHYYLESSLYADGKVQQTVDALIAAGKTYEQEGALWLRTT 303

Query: 128 DYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRA 182
           D GDDKDRVM+K+DG+YTYFVPDVAYH  KW RG+ +VIN+QGSDHHGTIARVRA
Sbjct: 304 DDGDDKDRVMRKSDGSYTYFVPDVAYHTTKWGRGFTQVINVQGSDHHGTIARVRA 358


>XF0147 [J] COG0018 Arginyl-tRNA synthetase Xfa Xylella fastidiosa 9a5c
          Length = 586

 Score =  226 bits (576), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 7/218 (3%)

Query: 8   RXRARGFKPGDAEWPESAYNGDYIADIARDFLDKKTVSASDGEPVTGSGEVDDIESIRRF 67
           + RARG KPGDA WP  AYNG+YIADIA+ +L   +++  D   +T +  VDD  +I  F
Sbjct: 205 QARARGLKPGDAFWPTDAYNGEYIADIAKAYLAGDSINMVD-TIITSTKNVDDTAAIHHF 263

Query: 68  AVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALIAAGKTYEQDGALWLRTT 127
           AV YLR+EQ+ DL AF V FD Y+LESSLY DGKV   V  LI +G TYE+ GALWL++T
Sbjct: 264 AVNYLRNEQNHDLAAFNVDFDIYFLESSLYKDGKVEETVQKLINSGHTYEEGGALWLKST 323

Query: 128 DYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRATRGHS 187
            +GDDKDRVM+K+DG+YTYFVPD+AYH++KWQRGY + I   G+DHHG++ARV       
Sbjct: 324 HFGDDKDRVMRKSDGSYTYFVPDIAYHLSKWQRGYERAITELGADHHGSLARVH------ 377

Query: 188 AGLSRLRAXRPLAWAFRRAIPTTCCTRWSPSCAMEKRS 225
           AGL  L    P  W            R      + KRS
Sbjct: 378 AGLQALEIGIPPGWPEYVLHQMVTVMRGGEEVKLSKRS 415


>BH3808 [J] COG0018 Arginyl-tRNA synthetase Bha Bacillus halodurans
          Length = 556

 Score =  145 bits (366), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 6/165 (3%)

Query: 18  DAEWPESAYNGDYIADIARDFLDKKTVSASDGEPVTGSGEVDDIESIRRFAVAYLRHEQD 77
           + + PE  Y+G+ I    +D      ++ + G+        + +   R + +     +  
Sbjct: 194 EKDMPEDGYHGEDIIQFGKD------LAETHGDKFVHESSEERLAFFREYGLKRELEKIK 247

Query: 78  LDLQAFGVKFDNYYLESSLYADGKVAAAVDALIAAGKTYEQDGALWLRTTDYGDDKDRVM 137
            DL+ F V FDN+Y E+SLY  GKV   ++ L   GKTYEQDGALW R+T+YGDDKDRV+
Sbjct: 248 SDLEEFRVPFDNWYSETSLYTTGKVEKTLNVLKEKGKTYEQDGALWFRSTEYGDDKDRVL 307

Query: 138 KKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRA 182
            K DG+YTY  PD++YH +K+ RG+ K+INI G+DHHG I R++A
Sbjct: 308 VKNDGSYTYLTPDISYHEDKFLRGFEKLINIWGADHHGYIPRMKA 352


>lin2706 [J] COG0018 Arginyl-tRNA synthetase Lin Listeria innocua
          Length = 556

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 10/207 (4%)

Query: 18  DAEWPESAYNGDYIADIARDFLDKKTVSASDGEPVTGSGEVDDIESIRRFAVAYLRHEQD 77
           ++E+PE  Y G  I  + +D      ++A  G+    + E +     R  A+A+   +  
Sbjct: 194 ESEFPEDGYRGSDIIALGKD------LAAKYGDKYVNASEEERRSVFRVDALAFETGKLR 247

Query: 78  LDLQAFGVKFDNYYLESSLYADGKVAAAVDALIAAGKTYEQDGALWLRTTDYGDDKDRVM 137
            DL+ F V FD ++ E+SLY + KV  A++ L   G  YEQDGA WLRTTD+ DDKDRV+
Sbjct: 248 ADLEEFRVSFDEWFSETSLYEENKVLPALERLRENGYIYEQDGATWLRTTDFEDDKDRVL 307

Query: 138 KKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRA---TRGHSAGLSRLR 194
            K+DG+YTYF+PD+AYH+NK +RG+  +I+I G+DHHG I R+RA     G+S     + 
Sbjct: 308 IKSDGSYTYFLPDIAYHLNKLERGFDVLIDIWGADHHGYIPRMRAAIEALGYSPNQLEVE 367

Query: 195 AXRPLAWAFRRAIPTTCCTRWSPSCAM 221
             + L   F   +      R   S  M
Sbjct: 368 IIQ-LVHLFEDGVQVKMSKRTGKSVTM 393


>BS_argS [J] COG0018 Arginyl-tRNA synthetase Bsu Bacillus subtilis
          Length = 556

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 6/162 (3%)

Query: 21  WPESAYNGDYIADIARDFLDKKTVSASDGEPVTGSGEVDDIESIRRFAVAYLRHEQDLDL 80
            PE  Y G+ I  I       K ++   G+      E + +   R + + Y   +   DL
Sbjct: 197 MPEDGYRGEDIIAIG------KRLAEEYGDRFVNEEESERLAFFREYGLKYELEKLRKDL 250

Query: 81  QAFGVKFDNYYLESSLYADGKVAAAVDALIAAGKTYEQDGALWLRTTDYGDDKDRVMKKT 140
           + F V FD +Y E+SLY +GK+  A++AL   G  YE+DGA W R+T +GDDKDRV+ K 
Sbjct: 251 ENFRVPFDVWYSETSLYQNGKIDKALEALREKGHVYEEDGATWFRSTTFGDDKDRVLIKK 310

Query: 141 DGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRA 182
           DGTYTY +PD+AYH +K  RG+ K+IN+ G+DHHG I R++A
Sbjct: 311 DGTYTYLLPDIAYHKDKLDRGFDKLINVWGADHHGYIPRMKA 352