BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0074.p         (81 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB1939 [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/v...   110   7e-25
NMA0514 [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/v...   110   7e-25
RSc3322 [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/v...   103   1e-22
PA5559 [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/va...    95   3e-20
VC2769 [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/va...    92   3e-19

>NMB1939 [C] COG0636 F0F1-type ATP synthase, subunit
          c/Archaeal/vacuolar-type H+-ATPase, subunit K Nme
          Neisseria meningitidis MC58
          Length = 78

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 65/72 (90%)

Query: 7  VALACGLIIGLGAIGACIGIAIMGGKYLEASARQPELMNTLQTKMFLLAGLIDAAFLIGV 66
          +A+ACGLI+ LGA+GA IGIA++G KYLE+SARQPEL+  LQTK+FL+AGLIDAAFLIGV
Sbjct: 4  IAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPLQTKLFLIAGLIDAAFLIGV 63

Query: 67 GIAMLFAFANPF 78
           IA+LFAF NPF
Sbjct: 64 AIALLFAFVNPF 75


>NMA0514 [C] COG0636 F0F1-type ATP synthase, subunit
          c/Archaeal/vacuolar-type H+-ATPase, subunit K NmA
          Neisseria meningitidis Z2491
          Length = 78

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 65/72 (90%)

Query: 7  VALACGLIIGLGAIGACIGIAIMGGKYLEASARQPELMNTLQTKMFLLAGLIDAAFLIGV 66
          +A+ACGLI+ LGA+GA IGIA++G KYLE+SARQPEL+  LQTK+FL+AGLIDAAFLIGV
Sbjct: 4  IAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPLQTKLFLIAGLIDAAFLIGV 63

Query: 67 GIAMLFAFANPF 78
           IA+LFAF NPF
Sbjct: 64 AIALLFAFVNPF 75


>RSc3322 [C] COG0636 F0F1-type ATP synthase, subunit
          c/Archaeal/vacuolar-type H+-ATPase, subunit K Rso
          Ralstonia solanacearum
          Length = 88

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 23 CIGIAIMGGKYLEASARQPELMNTLQTKMFLLAGLIDAAFLIGVGIAMLFAFANPFIA 80
          C+GIA+MGGKY+EA ARQPELMN LQTKMFLLAGLIDAAFLIGVG+AMLFAFANP ++
Sbjct: 28 CLGIALMGGKYIEACARQPELMNPLQTKMFLLAGLIDAAFLIGVGVAMLFAFANPLLS 85


>PA5559 [C] COG0636 F0F1-type ATP synthase, subunit
          c/Archaeal/vacuolar-type H+-ATPase, subunit K Pae
          Pseudomonas aeruginosa
          Length = 85

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 61/80 (76%)

Query: 2  TDVSFVALACGLIIGLGAIGACIGIAIMGGKYLEASARQPELMNTLQTKMFLLAGLIDAA 61
          T V   A+A  L+IGLGA+G  IG  ++GGK+LE +ARQPE++  LQ KMF++AGL+DA 
Sbjct: 3  TVVGLTAIAVALLIGLGALGTAIGFGLLGGKFLEGAARQPEMVPMLQVKMFIVAGLLDAV 62

Query: 62 FLIGVGIAMLFAFANPFIAK 81
           +IGVGIA+ F FANPF+ +
Sbjct: 63 TMIGVGIALFFTFANPFVGQ 82


>VC2769 [C] COG0636 F0F1-type ATP synthase, subunit
          c/Archaeal/vacuolar-type H+-ATPase, subunit K Vch
          Vibrio cholerae
          Length = 85

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 62/80 (77%)

Query: 2  TDVSFVALACGLIIGLGAIGACIGIAIMGGKYLEASARQPELMNTLQTKMFLLAGLIDAA 61
          T +SF A+A  +I+GL A+G  IG A++GGK+LE +ARQPE+   LQ KMF++AGL+DA 
Sbjct: 3  TVLSFSAIAVAIIVGLCAVGTAIGFAVLGGKFLEGAARQPEMAPMLQVKMFIIAGLLDAV 62

Query: 62 FLIGVGIAMLFAFANPFIAK 81
           +IG+ IA+LF FANPF+ +
Sbjct: 63 PMIGIVIALLFTFANPFVGQ 82