BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0063.p         (116 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00791 [J] COG0251 Putative translation initiation inhibitor, ...    95   4e-20
PA5303 [J] COG0251 Putative translation initiation inhibitor, yj...    92   3e-19
yoaB [J] COG0251 Putative translation initiation inhibitor, yjgF...    92   4e-19
Z2852 [J] COG0251 Putative translation initiation inhibitor, yjg...    92   4e-19
ECs2518 [J] COG0251 Putative translation initiation inhibitor, y...    92   4e-19

>SMc00791 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Sme Sinorhizobium meliloti
          Length = 114

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 3   KIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRERI 62
           +I+RF T  RMSQ V+ N   +++GQV  +AG  +  Q  + LA+ D  L   G  + RI
Sbjct: 2   EIKRFETGPRMSQAVVYNNTVYLAGQV-GNAGDDVVTQTKQALAEVDRLLALAGTDKTRI 60

Query: 63  VSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 116
           +SA VWL+    FA  N+VW+AW+P GHAP RA  +A L  P   VEV V AA+
Sbjct: 61  LSATVWLADMADFAKMNSVWDAWVPQGHAPARATGEAKLATPEYLVEVIVTAAL 114


>PA5303 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Pae Pseudomonas aeruginosa
          Length = 117

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 4   IERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRERIV 63
           I+R +TN RMSQ+V+ NG  +++GQV +   A + QQ  E LA  +  L+  G  + RI+
Sbjct: 3   IQRQHTNERMSQIVVHNGTVYLAGQVGEDMSAGVEQQTRETLAAIERLLEEAGTDKTRIL 62

Query: 64  SANVWLSSPE-HFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 116
           S  ++L   +  F   N VW+ WLP G AP RA V+A L  P + VE++VVAA+
Sbjct: 63  SVTIYLKDIDADFEGMNRVWDQWLPRGVAPARATVEAKLCEPEILVEMSVVAAL 116


>yoaB [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Eco Escherichia coli K12
          Length = 130

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRE 60
           M  I R +  AR S +VI N   + +G VP++  A   +Q A  LA+ DA L+ QG  + 
Sbjct: 16  MMTIVRIDAEARWSDVVIHNNTLYYTG-VPENLDADAFEQTANTLAQIDAVLEKQGSNKS 74

Query: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 116
            I+ A ++L+    FAA N  W+AW+ AGHAP R  VQA LM P   VE+ +VAAV
Sbjct: 75  SILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV 130


>Z2852 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           EcZ Escherichia coli O157:H7 EDL933
          Length = 130

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRE 60
           M  I R +  AR S +VI N   + +G VP++  A   +Q A  LA+ DA L+ QG  + 
Sbjct: 16  MMTIVRIDAEARWSDVVIHNNTLYYTG-VPENLDADAFEQTANTLAQIDAVLEKQGSNKS 74

Query: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 116
            I+ A ++L+    FAA N  W+AW+ AGHAP R  VQA LM P   VE+ +VAAV
Sbjct: 75  SILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV 130


>ECs2518 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Ecs Escherichia coli O157:H7
          Length = 130

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIPQQAAEVLAKNDAQLQAQGIGRE 60
           M  I R +  AR S +VI N   + +G VP++  A   +Q A  LA+ DA L+ QG  + 
Sbjct: 16  MMTIVRIDAEARWSDVVIHNNTLYYTG-VPENLDADAFEQTANTLAQIDAVLEKQGSNKS 74

Query: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLDVEVAVVAAV 116
            I+ A ++L+    FAA N  W+AW+ AGHAP R  VQA LM P   VE+ +VAAV
Sbjct: 75  SILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV 130