BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0059.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2380 [M] COG2885 Outer membrane protein and related peptidogl...   113   2e-25
XF0363 [M] COG2885 Outer membrane protein and related peptidogly...    94   1e-19
mlr0220 [M] COG2885 Outer membrane protein and related peptidogl...    91   9e-19
VC1195 [M] COG2885 Outer membrane protein and related peptidogly...    89   3e-18
SMc00354 [M] COG2885 Outer membrane protein and related peptidog...    88   5e-18

>RSc2380 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 209

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 77/120 (64%)

Query: 2   QVSQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTG 61
           Q+S+  D  LKL IPS +SFDT  A IKP  R  LD  A TL ++P     +VGHTD+TG
Sbjct: 85  QISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLDSVAETLSQHPELAANVVGHTDSTG 144

Query: 62  SDAINDPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFV 121
           +   N  LS +RA     YL+ RGVA NR S +GRG  +P+  N ++A RA+NRRVEI++
Sbjct: 145 NPNYNMSLSQRRAQSVASYLTDRGVARNRMSAEGRGQTQPVGDNATEAGRAQNRRVEIYL 204


>XF0363 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Xfa Xylella
           fastidiosa 9a5c
          Length = 242

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 5/131 (3%)

Query: 1   VQVSQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNT 60
           + V +  DN + L +P  I+FD G++ +KP+    L   A+TL E   T + +VG+TD+ 
Sbjct: 109 IDVKRDGDN-ITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYTDSI 167

Query: 61  GSDAINDPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEI- 119
           GSD +N  LS  RA     YL+ +GV   R  I G G   P+  N+++A R++NRRVEI 
Sbjct: 168 GSDVVNQRLSEDRAGAVASYLAGQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIH 227

Query: 120 ---FVAEQQAA 127
              F AE   A
Sbjct: 228 LIPFSAENSGA 238


>mlr0220 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Mlo
           Mesorhizobium loti
          Length = 216

 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 1   VQVSQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNT 60
           V V+++ D ++ L +PSDI+F+  +  +KP   PVL+  A  L +   TTV + GHTD+T
Sbjct: 93  VSVTRSGD-QIILNMPSDITFNVDQDAVKPGFYPVLNSVALVLKKFKQTTVDVFGHTDST 151

Query: 61  GSDAINDPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEI 119
           G D  N  LS +RA    +YLS +GV   RF++ G G   P+ +N + A R +NRRVEI
Sbjct: 152 GGDQHNFDLSQRRALAVANYLSGQGVDQRRFAVTGFGKTRPIASNATAAGREQNRRVEI 210


>VC1195 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 223

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 67/119 (56%)

Query: 1   VQVSQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNT 60
           VQV +  +N+L L + + I F +    +   +   L   A  LVE P T++ I GHTD+T
Sbjct: 99  VQVVRVGENQLMLRMENGIGFTSNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDST 158

Query: 61  GSDAINDPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEI 119
           GSD  N  LS +RA   R +L S+GVAA R   +G G   PL +N +   RA NRRVEI
Sbjct: 159 GSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEI 217


>SMc00354 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Sme
           Sinorhizobium meliloti
          Length = 221

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 69/116 (59%)

Query: 7   ADNRLKLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAIN 66
           A +R+ L +PS+I+F T R  + P     LD  A  L +   T + + GHTD+TGS + N
Sbjct: 101 AGDRIILNMPSNITFATDRDQVIPAFYSTLDSVAIVLRKFNKTLIDVDGHTDSTGSASYN 160

Query: 67  DPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFVA 122
             LS +RA+   +YL+SRGV   R S  G G   P+ +N ++  RA+NRRVEI +A
Sbjct: 161 QGLSERRAASVANYLASRGVDQRRMSAVGYGLERPIASNATEVGRAQNRRVEISIA 216