BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0055.p (292 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1764 [R] COG2071 Predicted glutamine amidotransferases Cac Cl... 132 1e-30 SP2072 [R] COG2071 Predicted glutamine amidotransferases Spn Str... 129 1e-29 FN0505 [R] COG2071 Predicted glutamine amidotransferases Fnu Fus... 122 9e-28 L120396 [R] COG2071 Predicted glutamine amidotransferases Lla La... 122 1e-27 FN0218 [R] COG2071 Predicted glutamine amidotransferases Fnu Fus... 115 1e-25 >CAC1764 [R] COG2071 Predicted glutamine amidotransferases Cac Clostridium acetobutylicum Length = 241 Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 3/178 (1%) Query: 99 LRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIEAGKPVLGI 158 +++Y +DGL+L GG D++P Y ++ T RD YE +L + +E P+LGI Sbjct: 49 IKNYIDIIDGLILSGGEDINPLFYGENPTNKINYTSPERDEYEKKLYLKALEEDMPILGI 108 Query: 159 CRGCQLINVAFGGTLYQDIATDVPTAIPH--VNEQYDSNYHTLHFPQGSSLANLLKAENA 216 CRG QL+N GG LYQDI V + H V + YHT++ + S L N+ E Sbjct: 109 CRGLQLMNSVSGGNLYQDINMQVENSNGHSPVGISKSNLYHTVNIVKNSKLFNIFCEEEI 168 Query: 217 VVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRAGSPELL 274 VNS HHQA++ L + A S D IVE I ++ FV+G+QWHPE+ + PE L Sbjct: 169 KVNSFHHQAIKKLSDKFIISAQSS-DGIVEGIEHKYNTFVLGVQWHPEYLSSKYPEFL 225 >SP2072 [R] COG2071 Predicted glutamine amidotransferases Spn Streptococcus pneumoniae TIGR4 Length = 242 Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 24/247 (9%) Query: 32 RRVMQRTLKIGVSARIFHPEAGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNTNGL 91 R +M RT+ +GV+A + +A K + S E I Q L +IP + + Sbjct: 11 RGIMARTV-VGVAANLCPVDAEGKIIHSSVSCRFAEIIRQV----GGLPLVIPVGDES-- 63 Query: 92 VHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIEA 151 +RDY + +D L+L GG +V PQ Y + T + VRD +EL LL E + Sbjct: 64 ------VVRDYVEMIDKLILTGGQNVHPQFYGEKKTVESDDYNLVRDEFELALLKEALRQ 117 Query: 152 GKPVLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHTLHFPQGSSLANLL 211 KP++ ICRG QL+NVAFGGTL Q+I H H++ +GS +A L Sbjct: 118 NKPIMAICRGVQLVNVAFGGTLNQEIEG-------HWQGLPFGTSHSIETVEGSVVAKLF 170 Query: 212 KAENAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEF---HRA 268 E+ VNS+H Q+++DL + V A+ DQ +EAI ++GLQWHPEF Sbjct: 171 GKESQ-VNSVHRQSIKDLAPNFRVTAIDSRDQTIEAIESIDEHRIIGLQWHPEFLVNEED 229 Query: 269 GSPELLD 275 G+ EL + Sbjct: 230 GNLELFE 236 >FN0505 [R] COG2071 Predicted glutamine amidotransferases Fnu Fusobacterium nucleatum Length = 243 Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 131/259 (50%), Gaps = 20/259 (7%) Query: 35 MQRTLKIGVSARIFHPEAGAKGLRSKTLQYLEESIAQWVMSRDVLVFMIPTVNTNGLVHP 94 M+R IG+S+ + E+G+ + Y+ + V+ + +IP TN V Sbjct: 1 MERKTIIGISSSVIVDESGSFAGYKRA--YVNKDYVDAVVRAGGVPLIIP-FTTNKEVII 57 Query: 95 SNIRLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIEAGKP 154 S +L +DGL+L GG DVSP +Y Q ++ RD YE+ LL E + P Sbjct: 58 SQAQL------IDGLILSGGHDVSPYNYGQEPSQKLGETFPERDTYEMILLEESKKRNIP 111 Query: 155 VLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNY--HTLHFPQGSSLANLLK 212 +LGICRG QLINVA GGTLYQD++ +P I N+ H + + S ++++ Sbjct: 112 ILGICRGSQLINVAAGGTLYQDLSL-IPGNILKHNQVNKPTLKTHIIKIEENSIISSVFG 170 Query: 213 AENAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPEFHRAGSPE 272 E +VNS HHQA+ + D V A + D +VEAI ++ F++ +QWHPE Sbjct: 171 KE-TMVNSFHHQAIDKVADDFKVVARAN-DGVVEAIEHKTYKFLVAVQWHPEMLA----- 223 Query: 273 LLDCTPVLDSFLRAARETR 291 ++C + F + E + Sbjct: 224 -VECEKARELFAKFVEEAK 241 >L120396 [R] COG2071 Predicted glutamine amidotransferases Lla Lactococcus lactis Length = 236 Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 7/169 (4%) Query: 98 RLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIEAGKPVLG 157 +++Y +D +VL GGADVSP Y + + D +RD +EL + +EA KP+LG Sbjct: 52 NIKNYLTLVDKIVLTGGADVSPYLYGEEPNAKLGTTDPIRDRFELATIKAALEANKPILG 111 Query: 158 ICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHTLHFP--QGSSLANLLKAEN 215 +CRG QL+NV FGG LYQD++ + I H+ T H Q S+L L EN Sbjct: 112 VCRGLQLLNVYFGGRLYQDLS-QTSSQIKHLQSPTPQEIPTHHISVEQESALGFL--PEN 168 Query: 216 AVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHPE 264 +VNS HHQ ++DLG+ L+ A G D +VEAI K V+ +QWHPE Sbjct: 169 YMVNSFHHQVIKDLGQGLTAIA-HGNDGLVEAIE-NKEKHVLAVQWHPE 215 >FN0218 [R] COG2071 Predicted glutamine amidotransferases Fnu Fusobacterium nucleatum Length = 289 Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 9/173 (5%) Query: 99 LRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELELLHEFIEAGKPVLGI 158 +R+ K LDGL+L GG DV P Y + + RD++E+ L+ I+ KP+L I Sbjct: 56 IREQVKLLDGLILSGGRDVDPHFYGEEPLEKLEAIFPERDVHEMALIRAAIDLKKPILAI 115 Query: 159 CRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNY---HTLHFPQGSSLANLL-KAE 214 CRG Q++NV +GGTLYQDI+ I H Q S+Y H+++ + S L + K+E Sbjct: 116 CRGMQILNVTYGGTLYQDISYAPGEHIKHC--QVGSSYQATHSINIDKNSILFKMADKSE 173 Query: 215 NAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAP--FVMGLQWHPEF 265 VNS HHQA++ + + L V A + PD I+EA+ FV+G+Q+HPE Sbjct: 174 IERVNSFHHQALKQVAKGLKVVA-TAPDGIIEAVERENEDEVFVIGVQFHPEM 225