BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0048.p (218 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li... 283 1e-76 PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 248 6e-66 RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li... 237 1e-62 STM3177 [TK] COG0745 Response regulators consisting of a CheY-li... 222 5e-58 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 220 2e-57 >RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 142/226 (62%), Positives = 177/226 (78%), Gaps = 9/226 (3%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYA---------MLLLD 51 MRVLLVEDD M+GEAVRKGLRQDGFAIDWV+DG++A A+ A ++LLD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63 Query: 52 LGLPQKDGLAVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSAR 111 LGLP++DGL V+ +R RG +P+LI TARDAVADRVAGL+AGADDYL+KPFDL+EL+AR Sbjct: 64 LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123 Query: 112 MRALSRRQAGRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSR 171 M AL RRQ GRA+ L++ EV+LNP T EV +G P+ LS REF +L A + RPG V S Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSRPGKVWSI 183 Query: 172 AQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVP 217 AQL++ LYGWD+ + SN VEV+IHALRKK+GS FI+N+RGVGY++P Sbjct: 184 AQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIRGVGYVIP 229 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 248 bits (634), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 164/214 (76%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL EDD ++G+ +R GLR +G ++WV DG +A+ AL T+++ +L+LD+GLP++ GL Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR LR +G PVL+ TARD VADRVAGLD+GADDYL KPFDL+EL AR+RAL+RR Sbjct: 61 DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GRA + E+ L+PATH+VT+SG+ V L+ RE+ LL+ ++ G VLSR QLE+ LYG Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 W +ESNA+EVH+H LR+K+G+ I+ VRG+GY Sbjct: 181 WSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGY 214 >RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 221 Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 129/217 (59%), Positives = 162/217 (74%), Gaps = 1/217 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLL+EDDPM+G V LR +A+DWV+DG++A + Y +LLLDLGLP +DG Sbjct: 1 MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGH 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLRTLR R N +PVLI TARDAV +RV GLD GADDY++KPF++ EL ARMRA+ RR+ Sbjct: 61 AVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120 Query: 121 GRAESLVQVREVVLNPATHEVTVS-GKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLY 179 G A ++ + L+PATHEV G+PV LS REF LLQA M RPG +LSR +LEE++Y Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRGELEERIY 180 Query: 180 GWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 GW + SNAVE IHALRKK+G++ IKNVRGVG++V Sbjct: 181 GWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMV 217 >STM3177 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 219 Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 108/214 (50%), Positives = 149/214 (69%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD ++G+ ++ GL + GF++DW +G+ AL + Y ++LDL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR RE+G PVLI TARDA+A+RV GL GADDYL KPF L E++AR+ AL RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 G+A S ++ +V LNP T++G+P+ L +EF LL+ + G VL R +EEKLY Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 WDD + SNAVEVH+H LR+K+GS+FI+ V G+GY Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGY 214 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/214 (50%), Positives = 148/214 (69%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL+EDD ++G+ ++ GL + GF++DW G+ AL + Y ++LDL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR RE+G PVLI TARDA+A+RV GL GADDYL KPF L E++AR+ AL RR Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 G+A + ++ V+L+P T++G+P+ L +EF LL+ M G VLSR +EEKLY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 WD+ + SNAVEVH+H LR+K+GSDFI+ V G+GY Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214