BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0040.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 129 1e-29 PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 108 1e-23 PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 104 2e-22 lin1846 [K] COG0583 Transcriptional regulator Lin Listeria innocua 103 5e-22 ybhD [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 101 2e-21 >AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 1/300 (0%) Query: 1 MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 60 MQ +L YF ++ RT S+ AAAE L+VA +AVSRQI +E G PL ER +RG+ LT A Sbjct: 33 MQLRALMYFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLTAA 92 Query: 61 GEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGL 120 GE+L A A + L E++ V + L + +G +T+ + +LL V AQF +YP L Sbjct: 93 GELLAARAGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYPKL 152 Query: 121 QFKLHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRESGPVFALMKRDHPLASRTL 180 +F++H+ A +A + + EAD+ V+ G+ V R + H LA++ Sbjct: 153 RFEVHITSARQAMEALGAAEADLVVSLFAPKLSGVKVRSRTRISYDVIFPAGHALAAQPE 212 Query: 181 LALSDLSPYPLALPEVGTTVRQLVDIACSMRGLLFAPVFTSHSLGAVYRFTTRSPDTVAL 240 ++L +L+ PLALP+ RQ D + G+ PVF + SL + + L Sbjct: 213 VSLKELAGMPLALPDKSFAARQAFDTLFADAGIELDPVFITSSLEMLKELVLGNAAATLL 272 Query: 241 GGFLTVHERAEEDGMILVAMAESELHQRTVQVQTMAGRKLPPAVAAFSDFLIAALRQVRA 300 L+V M+ V +A + + + R+L A + +DF+ +R+ A Sbjct: 273 PA-LSVAREIRSGQMVAVPLAGKKGIHTQIDLCVAPDRQLSFAASKLADFIERFMREATA 331 >PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 311 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 6/299 (2%) Query: 1 MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 60 + +L Y +V GSL AA+ L++ SA+SRQ+A +EE GV L +R +G+ T A Sbjct: 4 LSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEA 63 Query: 61 GEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGL 120 GE+L+A+ R+ E VL+ + L + QG + LA EGF DL+ F +YPG+ Sbjct: 64 GELLVAHYRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGI 123 Query: 121 QFKLHVVGAARASQMVIDGEADISVTYSLAPAEG--LAVAYRESGPVFALMKRDHPLAS- 177 + ++ + GA +V + D+++ Y AP E L V P+ ++ +H LA Sbjct: 124 ELEVRMAGANEGVALVKEDAVDLALVY--APVEDGELDVHVDTRQPLDLIIPANHALAGH 181 Query: 178 RTLLALSDLSPYPLALPEVGTTVRQLVDIACSMRGLLFAPVFTSHSLGAVYRFTTRSPDT 237 R + + L LAL T + QL IA + + P ++S+ + F +S Sbjct: 182 RGAVPMRALRNESLALIHNSTGMGQLAVIAAQLERIELRPKLRTNSVAVLTNF-VKSGIG 240 Query: 238 VALGGFLTVHERAEEDGMILVAMAESELHQRTVQVQTMAGRKLPPAVAAFSDFLIAALR 296 VA LTV E + + +A L ++ + GR+L A A + L +R Sbjct: 241 VAFMPELTVSHEIEAGHIRCLPLAHPALRDARARIVSHKGRELTVAAIACLEHLRRGMR 299 >PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 313 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 6/207 (2%) Query: 1 MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 60 + + ++ YF V R S+ AA RL+VA SAV+RQI K+E+E G PLF+R G+ LT A Sbjct: 7 IHAPAIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTGA 66 Query: 61 GEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGL 120 GE+ + L +ME+V +E+ L + G + +A E DLLP V RE+YP + Sbjct: 67 GEIFARHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPDI 126 Query: 121 QFKLHVVGAARASQMVIDGEADISVTYSL---APAEGLAVAYRESGPVFALMKRDHPLAS 177 + ++G+ + V G D+ + ++L A + ++V + G A++ HPLA Sbjct: 127 TVGVTLLGSQAIPEAVSSGAVDLGLAFALPRSADLQQVSVGHFRLG---AIVSPQHPLAR 183 Query: 178 RTLLALSDLSPYPLALPEVGTTVRQLV 204 +A +D + L + + ++ L+ Sbjct: 184 HQAIAFADCVEHGLIMAKSELSIHHLL 210 >lin1846 [K] COG0583 Transcriptional regulator Lin Listeria innocua Length = 295 Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 14/299 (4%) Query: 1 MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 60 M+ L+YF +V R +T A+E L VA SAVSRQI K+EEE GVPLF+R R M LT Sbjct: 1 MELRQLKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELGVPLFDRVGRNMQLTSV 60 Query: 61 GEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGL 120 G+ ++ A L E+++ A V +G + + + +LP+V + FRE+YP + Sbjct: 61 GQDFLSQATIALNELQKAEALVTEYTDPTKGTVRVGLPNSLSTKVLPSVISTFREKYPEI 120 Query: 121 QFKLHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRESGPVFALM-KRDHPLASRT 179 ++ ++M+++G D++ + + A R L+ H LA Sbjct: 121 TYQFMEGTNEELTEMLVNGVLDMTFLSPVPESSEQIEALRFFDEKLKLIVPTSHHLAENF 180 Query: 180 LLALSDLSPYPLALPEVGTTVRQLVDIACSMRGLLFAPVFTSHSLGAVYRFTTRSPDTVA 239 ++L +LS L + ++V A + +G F S + V Sbjct: 181 TVSLKELSSEKFVLYPEDFDLYKIVTKAANKKGFEPQIAFQSRDFYTIQGL-------VG 233 Query: 240 LGGFLTVHERAEEDGMIL-----VAMAESELHQRTVQVQTMAGRKLPPAVAAFSDFLIA 293 G +++ DG I +A+ + EL +R+V + T R L P+ F F+I+ Sbjct: 234 AGLGISILPEMILDGAIFKETKSIALRDKEL-RRSVGIITTKKRNLSPSENLFRSFIIS 291 >ybhD [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 338 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 97/188 (51%) Query: 4 TSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPAGEV 63 +S++ F + + S AA+ L++ A++R+I KMEE+ V LFER R + LT AG+ Sbjct: 27 SSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLTKAGKR 86 Query: 64 LMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGLQFK 123 L+ AR + + ++ L +R ++A +G++TLAC + LP +F E YP ++ + Sbjct: 87 LLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVR 146 Query: 124 LHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRESGPVFALMKRDHPLASRTLLAL 183 + G + V+ E+D + + + + P +RDHPLA + L+ Sbjct: 147 ILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEW 206 Query: 184 SDLSPYPL 191 +L Y + Sbjct: 207 QELVGYKM 214