BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0030.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT246 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,...    64   2e-10
CPn0305 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase comple...    62   5e-10

>CT246 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit Ctr Chlamydia trachomatis
          Length = 328

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 12  EFLAQDPRTVFMGQAVAVPGTA---MSNTLKDIPRERLIELPVAEEMQMGMTTGMALAGS 68
           E + +DP    +G+ VA    A     N L      R+I+ P++E    G+  G AL G 
Sbjct: 19  EEMTRDPNVCILGEEVAEYNGAYKVTKNLLDKWGPTRVIDTPISEAAFSGIGIGAALTGL 78

Query: 69  VPVSIFPRWNFLLCAMSQLISHLDKIDVMSNGGYQAKAIVRTSIGAQRPMHPQHQH 124
            P+  F  WNF L A  Q+ISH  K+  M+ G +    + R + GA   +  QH H
Sbjct: 79  RPIIEFMSWNFSLVAADQIISHAAKMYYMTGGKFAVPIVFRGANGAAAQVSCQHSH 134


>CPn0305 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit Cpn Chlamydophila pneumoniae CWL029
          Length = 328

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 12  EFLAQDPRTVFMGQAVAVPGTAMSNT---LKDIPRERLIELPVAEEMQMGMTTGMALAGS 68
           E +++DP    +G+ V     A   T   L     +R+I+ P++E    G+  G AL+G 
Sbjct: 19  EEMSRDPNVCILGEEVGDYNGAYKVTKGLLDKWGPKRVIDAPISEAAFSGIGIGAALSGL 78

Query: 69  VPVSIFPRWNFLLCAMSQLISHLDKIDVMSNGGYQAKAIVRTSIGAQRPMHPQHQH 124
            P+  F  WNF   A+ Q+ISH  K+  M+ G +    + R   GA   +  QH H
Sbjct: 79  RPIIEFMSWNFSFVALDQIISHAAKMHFMTGGKFSVPIVFRGPNGAAAQVSCQHSH 134