BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0014.p (658 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 322 3e-87 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 316 9e-86 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 303 7e-82 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 298 2e-80 RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 296 9e-80 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 228/521 (43%), Positives = 322/521 (61%), Gaps = 23/521 (4%) Query: 137 SGRYLPFFTKNADGSVQ-----GEPIIFQSTADADQWYYVPKQTRRVFVSEPHSYSTGGK 191 SG ++ + D S + G P + TA WY + + V+ P+ ++ GK Sbjct: 105 SGGFISVYVGYPDKSYKFADPSGVPPTYDPTARP--WYKQAAEAGKPVVTPPYVSASTGK 162 Query: 192 PLMIASINAPILVKEKFAGVASVIFQLAKLSDILRSIKSIDGVSLS---LISNSGVYASH 248 ++ + PIL + G+ V+ + ++ ++K+I S L++ +G +H Sbjct: 163 --LVVTFAVPIL---RDGGLKGVVASDVSMDAVIANVKAIHPTPASFGFLVNAAGKIVAH 217 Query: 249 PDPDRLGKK-----ADELPESATASIRKGESYEYHDASGAAHLLEPLRLYPEMAPWAIQL 303 PD D+ K + +L ++ A++ + + + GAA LL R + W + + Sbjct: 218 PD-DKFTLKPVTDLSADLSDATLAALAQTDKPLQVNVGGAAKLLH--RQGVQGTDWGLVV 274 Query: 304 SFQPSVVTAEANRLTIHSLILALVCSIVTAVVMVIALSRITRPLRTLGEAMTNLANGDAE 363 + S TA L S+ + +V ++V A ++ +R R L + +AM ++ +G + Sbjct: 275 ALDKSDATAGMRSLVTTSIGVLVVVALVAAAIVGAMTARAFRRLSMIRDAMDDIGSGSGD 334 Query: 364 LGARLEVRGKDELAKIAAGFNGFVEKIQQVLLQVRDSAGSVAIAGAEISRGNFDLSARTE 423 L RL G+DE+A+IA FN F +K+ VL Q+R + SV A EI+ GN DLS RTE Sbjct: 335 LTKRLPADGQDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGNADLSQRTE 394 Query: 424 QQAGALEETAAAMEELTSTVKKNADNAQYANELASTASETARRGGVVVAEVVQTMAEIDA 483 +QA +LEETA++MEELTS VK+NADNA+ A+ LA AS+ A RGG VV +VVQTM I+ Sbjct: 395 EQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATRGGSVVGQVVQTMGGINE 454 Query: 484 ASRKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAYRSSVAAKE 543 +S+K+ DIIGVI+ IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA RS+ AAKE Sbjct: 455 SSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKE 514 Query: 544 IKELIGDASGKVDAGRTLVQTAGQTMDEVVASVLKVSEIVEEISVASKEQSSGIEQVNRA 603 IK LI D+ +V G LV AG TM E+V +V +V++I+ EIS AS+EQSSGIEQVN+A Sbjct: 515 IKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMGEISAASEEQSSGIEQVNQA 574 Query: 604 IVQMDDGTQQNAALVEEAAGAAASLKQQADLLVSLVGEFRL 644 + QMD TQQNAALVE+AA AA SL++QA L VG FRL Sbjct: 575 VNQMDQVTQQNAALVEQAAAAAESLEEQARNLNDAVGSFRL 615 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 316 bits (810), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 175/327 (53%), Positives = 228/327 (69%), Gaps = 2/327 (0%) Query: 319 IHSLILALVCSIVTAVVMVIALSRITRPLRTLGEAMTNLANGDAELGARLEVRGKDELAK 378 I ++LA++ +++ ITRP+ +A G+ L LEV +DE+ + Sbjct: 190 IQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGN--LTHLLEVDTQDEIGR 247 Query: 379 IAAGFNGFVEKIQQVLLQVRDSAGSVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEE 438 + A +E + ++ QVR ++ A +E++ GN DLS+RTEQQA +LEETAAAME+ Sbjct: 248 LLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQ 307 Query: 439 LTSTVKKNADNAQYANELASTASETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGI 498 LTSTVK+NADNAQ A+ LAS AS A +GG V E +QTM+ I+ +SRK+VDIIGVIDGI Sbjct: 308 LTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGI 367 Query: 499 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAG 558 AFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RS+ AAKEIK LI D+ G V G Sbjct: 368 AFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTG 427 Query: 559 RTLVQTAGQTMDEVVASVLKVSEIVEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAALV 618 V+ AGQ + +VVA + V+ IV EIS +S+EQS GIEQ+N AI QMD TQ+NA+LV Sbjct: 428 TAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLV 487 Query: 619 EEAAGAAASLKQQADLLVSLVGEFRLE 645 EE+A AA +L+ QA+ L +V F+L Sbjct: 488 EESATAAQALQDQANQLADMVSTFKLH 514 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 303 bits (776), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 168/302 (55%), Positives = 227/302 (75%), Gaps = 2/302 (0%) Query: 343 ITRPLRTLGEAMTNLANGDAELGARLEVRGKDELAKIAAGFNGFVEKIQQVLLQVRDSAG 402 + PL L + ++ANGD L +EV G++E+ +AA ++ ++ +VR A Sbjct: 218 LIHPLNHLIAHIKHIANGD--LTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGAD 275 Query: 403 SVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEELTSTVKKNADNAQYANELASTASE 462 ++ +EI+ GN DLSARTEQQA +LEETAA+ME+LT+TVK+NA+NA+ A++LA +ASE Sbjct: 276 AIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASE 335 Query: 463 TARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 522 TA++GG VVA+VVQTM EI +S+K+ DI VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 336 TAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRG 395 Query: 523 FAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAGRTLVQTAGQTMDEVVASVLKVSEI 582 FAVVA EVR LA RS+ AAKEIK LI D+ +VD G LV++AG+TM ++V +V +V++I Sbjct: 396 FAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDI 455 Query: 583 VEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAALVEEAAGAAASLKQQADLLVSLVGEF 642 + EI+ AS EQS GI+Q+ +A+ +MD TQQNA+LVEE+A AAASL++QA +L + F Sbjct: 456 MGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVF 515 Query: 643 RL 644 L Sbjct: 516 VL 517 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 172/309 (55%), Positives = 226/309 (73%), Gaps = 3/309 (0%) Query: 338 IALSRIT-RPLRTLGEAMTNLANGDAELGARLEVRGKDELAKIAAGFNGFVEKIQQVLLQ 396 + L R+ RPL+ + + +A+GD L +E G+ E+ ++AAG + + + + Sbjct: 211 LGLQRVLLRPLQRIMAHIQTIADGD--LTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSA 268 Query: 397 VRDSAGSVAIAGAEISRGNFDLSARTEQQAGALEETAAAMEELTSTVKKNADNAQYANEL 456 VRD+A S+ EIS G+ DLS+RTEQQA ALEETAA+ME+LT+TV++N DNA+ A L Sbjct: 269 VRDNADSIYTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGL 328 Query: 457 ASTASETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDGIAFQTNILALNAAVEAARA 516 A TASETAR+GG VV VV TM +I +S K+VDI VIDGIAFQTNILALNAAVEAARA Sbjct: 329 AKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARA 388 Query: 517 GEQGRGFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDAGRTLVQTAGQTMDEVVASV 576 GEQGRGFAVVA EVRTLA RS+ AAKEIK LI ++ ++D G T V+ AG+TM E+V +V Sbjct: 389 GEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAV 448 Query: 577 LKVSEIVEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAALVEEAAGAAASLKQQADLLV 636 +V++I+ EI+ AS EQS GIEQV +A+ +MD TQQNA+LVEE+A AAA+L+ QA+ L Sbjct: 449 TRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELR 508 Query: 637 SLVGEFRLE 645 V FR++ Sbjct: 509 QAVAAFRIQ 517 >RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 646 Score = 296 bits (758), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 205/509 (40%), Positives = 290/509 (56%), Gaps = 17/509 (3%) Query: 143 FFTKNADGSVQGEPIIFQSTADADQWYYVPKQTRRVFVSEPHSYSTGGKPLMIASINAPI 202 FF+ +A G P + TA WY + V++P+ ++ G P + S AP+ Sbjct: 149 FFSTSA-----GTPKDYDPTAR--PWYKSAIAAGKPTVTKPYGDASTGVPYV--SFAAPL 199 Query: 203 LVKEKFAGVASVIFQLAKLSDILRSIKSIDGVSLSLISNSGVYASHPDPDRLGKKADE-- 260 + G S L + +++ ++ +++ G +HPD + K E Sbjct: 200 MRNGAATGALSGAVPLDGVREVVAAVHPTPSSLAFVVARDGQVIAHPDAKLMLKPVTEVS 259 Query: 261 --LPESATASIRKGESYEYHDASGAAHLLEPLRLYPEMAPWAIQLSFQPSVVTAEANRLT 318 L A S+ K + + +GAA LL+ + + W + ++ + TA R Sbjct: 260 AALTPDALTSLAKATAPLEVELAGAAKLLKAQAV--QGTDWYLVIALDKAEATA-GLRSV 316 Query: 319 IHSLILALVCSIVTAV-VMVIALSRITRPLRTLGEAMTNLANGDAELGARLEVRGKDELA 377 +L +A+V + AV + ++ R L + +AM + +G +L RL V G DE+A Sbjct: 317 ARALGVAMVLLTLAAVGIAAFFTAQSFRRLSQVRDAMDTIGSGGGDLTHRLPVVGNDEVA 376 Query: 378 KIAAGFNGFVEKIQQVLLQVRDSAGSVAIAGAEISRGNFDLSARTEQQAGALEETAAAME 437 +I+A FN F++KI +VLL+VR S ++ A EI GN DLS RTE A L+ET+AA+ Sbjct: 377 QISASFNTFIDKIGEVLLEVRASVENMKSATGEIEMGNRDLSLRTETSASNLQETSAALT 436 Query: 438 ELTSTVKKNADNAQYANELASTASETARRGGVVVAEVVQTMAEIDAASRKVVDIIGVIDG 497 ELT++VK +A+ A A LA ASE A RGG VV+ V TM I +S ++ +IIGVID Sbjct: 437 ELTTSVKNSAEAAVQATRLAGEASEAAVRGGEVVSGAVSTMDAIAQSSSRISEIIGVIDS 496 Query: 498 IAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAYRSSVAAKEIKELIGDASGKVDA 557 IAFQTNILALNAAVEAARAGE GRGFAVVA EVRTLA RS+ AA+EIK LI + V A Sbjct: 497 IAFQTNILALNAAVEAARAGENGRGFAVVAGEVRTLAQRSAAAAREIKALIQASEASVKA 556 Query: 558 GRTLVQTAGQTMDEVVASVLKVSEIVEEISVASKEQSSGIEQVNRAIVQMDDGTQQNAAL 617 G V AG TM E+V + +VS I+ EI A EQS+GI Q++R++ +MD TQQNAAL Sbjct: 557 GAERVDAAGATMREIVEGIQRVSRIIGEIDGAMHEQSAGISQIDRSVAEMDQATQQNAAL 616 Query: 618 VEEAAGAAASLKQQADLLVSLVGEFRLEG 646 VE++ A++ L +QA L VG FRL G Sbjct: 617 VEQSTAASSMLNEQAHGLARTVGLFRLRG 645