BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0002.p (399 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1101 [R] COG2984 ABC-type uncharacterized transport system, pe... 95 2e-19 PA3836 [R] COG2984 ABC-type uncharacterized transport system, pe... 81 5e-15 SMc03830 [R] COG2984 ABC-type uncharacterized transport system, ... 79 2e-14 BMEI0015 [R] COG2984 ABC-type uncharacterized transport system, ... 73 9e-13 AGc4844 [R] COG2984 ABC-type uncharacterized transport system, p... 71 5e-12 >VC1101 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Vch Vibrio cholerae Length = 321 Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 149/298 (50%), Gaps = 9/298 (3%) Query: 1 MKIYRYVASAGLVAASMSAGISFAQETTVPRVGFVAGAGGYPKMAVTNQAFFDGLADAGY 60 M+ + +A+A L A++ + S +T V + +P + T Q DGL GY Sbjct: 1 MRAGKVIATAVLAGAALLSSQSIMAKTAKVAVSQIVE---HPALDATRQGLLDGLKAKGY 57 Query: 61 KDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSSPGCAAAKNATTTVPVLCISV 120 ++G+ ++ ++TA+GN ++ + R+ + EN D LV ++P A +AT T+P++ +V Sbjct: 58 EEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAV 117 Query: 121 QDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQKLKPGLQTLGILFNPSNATHK 180 DP+ L L N+ G+ + Q + +++++ P ++++G+++NP A Sbjct: 118 T-DPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKEILPNVKSIGVVYNPGEANAV 174 Query: 181 RLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKAEIAIGLLGADTYAMRKEIAE 240 L+ + + + + +V A S D++ A A + K+++ L+ + + + Sbjct: 175 SLMELLKLSAAKHGIKLVEATALKSADVQSATQAI-AEKSDVIYALIDNTVASAIEGMIV 233 Query: 241 VAKANDFPIAMDTPGGYTQMGGVATIGVDIVPLYRRGALELMVPMLKGKKPGALELMV 298 A P+ Y + G +A++G D + + A + + +L+GK+PG+L++ V Sbjct: 234 AANQAKTPV-FGAATSYVERGAIASLGFDYYQIGVQTA-DYVAAILEGKEPGSLDVQV 289 >PA3836 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 325 Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 130/258 (50%), Gaps = 12/258 (4%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + + L +AGY+DG+ ++ +++A+GN + R+ + + D +V ++ Sbjct: 41 HPALDAARDGVKEALQEAGYEDGKNLKWQYQSAQGNTGTAAQIARKFIGDKPDVIVGIAT 100 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A AT ++P++ +V DP+ LT S + N+ GV LA + +Q+ +++K Sbjct: 101 PSAQALVAATKSIPIVFSTVT-DPVGAHLTPSWEASGTNVTGVSDMLA--LDKQIELIKK 157 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + PG + +G+++NP A ++ + + + + + +V A S D+ AA+S Sbjct: 158 VVPGAKRIGMVYNPGEANSVVVVKELKELLPKMGLSLVEASAPRSVDVSS---AARSLVG 214 Query: 221 EIAIGLLGADTYAMRKEIAEVAKAND--FP-IAMDTPGGYTQMGGVATIGVDIVPLYRRG 277 ++ D + A V ND P IA DT + G +A +G++ + ++ Sbjct: 215 KVDAIYTNTDNNVVSAYEALVKVGNDAKIPLIASDTDS--VKRGAIAALGINYKEMGKQT 272 Query: 278 ALELMVPMLKGKKPGALE 295 ++V +LKG+KPG ++ Sbjct: 273 G-RMVVRILKGEKPGEIK 289 >SMc03830 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Sme Sinorhizobium meliloti Length = 317 Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 15/293 (5%) Query: 7 VASAGLVAASMSAGISFAQETTVPRVGFVAGAGGYPKMAVTNQAFFDGLADAGYKDGRTM 66 +A A VA S+ A A E TV V +P + D LA AGYK+G + Sbjct: 6 IALAATVALSLPA---RADEVTVAVTAIVE----HPALDAARDGVKDALAAAGYKEGENL 58 Query: 67 QVIFRTAEGNMSLMPALIRETLPENVDYLVVSSSPGCAAAKNATTTVPVLCISVQDDPIR 126 + I+ +A+GN + + R+ E +V S+P A ++T +PV+ +V DP+ Sbjct: 59 KFIYESAQGNPATAAQIARQFAGEAPSVIVPISTPSAQAVVSSTRDIPVVFTAVS-DPLG 117 Query: 127 EGLTSSLASGSGNIVGVHSYLADGISQQLGMLQKLKPGLQTLGILFNPSNATHKRLLSDW 186 L + GN+ G+ +++ + +++++ P ++T+G L+N A LL+ Sbjct: 118 AQLVKDMEKPGGNVTGLSDL--SPVAEHVALIKEILPNVKTIGYLYNSGEANSVSLLAVL 175 Query: 187 ERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKAEIAIGLLGADTYAMRKEIAEVAKAND 246 + ++ + ++ AT S +++ A A I I A+ +A VA+ + Sbjct: 176 KEEAEKAGLSVIESAATKSAEVQGAARALVGRADAIYIPTDNTIISALEGAVA-VAEESK 234 Query: 247 FPI-AMDTPGGYTQMGGVATIGVDIVPLYRRGALELMVPMLKGKKPGALELMV 298 P+ DT G VA +G + + ++ E++V +LKG+ PG + + V Sbjct: 235 LPLFTADTDS--VSRGAVAALGFNYYDVGKQTG-EVVVRVLKGENPGDIAVKV 284 >BMEI0015 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Bme Brucella melitensis Length = 314 Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 130/265 (49%), Gaps = 12/265 (4%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + D LA+AGYK+G ++ I+++A+GN + + R+ + E D +V S+ Sbjct: 30 HPALDAARDGVKDALAEAGYKEGENLKFIYQSAQGNPATAAQIARQFVGEGPDVIVPIST 89 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A +AT +PV+ +V DP+ L L GN+ G+ + + + ++++ Sbjct: 90 PSAQAVVSATLDIPVVFTAVS-DPVGAQLVKDLKKPGGNVTGLSDM--SPVVEHIKLIKE 146 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + P ++ LG L+N LL+ + A + + IV AT S +++ A A Sbjct: 147 VMPNIKKLGYLYNSGETNSVSLLAALKEAAAAEGIEIVESAATKSAEVQGAARALVGRAD 206 Query: 221 EIAIGLLGADTYAMRKEIAEVAKANDFPI-AMDTPGGYTQMGGVATIGVDIVPLYRR-GA 278 + + A+ + VA+ + P+ DT + G +A +G + + ++ GA Sbjct: 207 AMYVPTDNTIVSALESAVG-VAEESKLPLFTADTDS--VKRGALAALGFNYYDVGKQTGA 263 Query: 279 LELMVPMLKGKKPGALELMVPMLKG 303 ++V +LKG+KPG ++ V + KG Sbjct: 264 --IVVKILKGEKPG--DIAVDIAKG 284 >AGc4844 [R] COG2984 ABC-type uncharacterized transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 122/254 (48%), Gaps = 10/254 (3%) Query: 41 YPKMAVTNQAFFDGLADAGYKDGRTMQVIFRTAEGNMSLMPALIRETLPENVDYLVVSSS 100 +P + LA+AGYK+G ++ ++ +A+GN + R+ + + +V S+ Sbjct: 48 HPALDAARDGVKAALAEAGYKEGENLKFLYESAQGNPGTAAQIARQFVGDAPAVIVPIST 107 Query: 101 PGCAAAKNATTTVPVLCISVQDDPIREGLTSSLASGSGNIVGVHSYLADGISQQLGMLQK 160 P A AT +PV+ +V DP+ L S+ GN+ G+ L G + L ++++ Sbjct: 108 PSAQAVVAATRDIPVVFTAVS-DPVGAQLIKSMEKPGGNVTGLSDMLPVG--EHLALIKE 164 Query: 161 LKPGLQTLGILFNPSNATHKRLLSDWERAVQQQRVVIVPMPATVSGDLEKAIYAAKSHKA 220 + P +++G ++N + A L+ + + + ++ AT S +++ A A KA Sbjct: 165 ISPNAKSIGFIYNSAEANSASTLALLKAEADKAGLKVIESVATKSAEVQGATRALVG-KA 223 Query: 221 EIAIGLLGADTYAMRKEIAEVAKANDFPI-AMDTPGGYTQMGGVATIGVDIVPLYRR-GA 278 ++ + + +A VA P+ A DT G VA +G + + ++ GA Sbjct: 224 DVIYVPTDNTIVSAFEAVAGVASEAKIPLYAADTDS--VARGAVAALGFNYFDVGKQTGA 281 Query: 279 LELMVPMLKGKKPG 292 ++V +LKG+KPG Sbjct: 282 --VVVRILKGEKPG 293