BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0030.p (226 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport... 296 3e-80 TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ... 226 3e-59 SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ... 219 4e-57 FN1429 [E] COG0411 ABC-type branched-chain amino acid transport ... 218 6e-57 alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 216 3e-56 >RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 265 Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 154/211 (72%), Positives = 180/211 (85%) Query: 11 GAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLEN 70 GAGKTTVFNLITGLL + G++ F + PH+IT+ GIARTFQNIR+FKEMTLLEN Sbjct: 37 GAGKTTVFNLITGLLEPTGGTLTFGGTSLVGKKPHQITQMGIARTFQNIRIFKEMTLLEN 96 Query: 71 VVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQR 130 VVVGMH HL+YG +LL+L G+R AE+ AR+RALELLSWV+LDHKA +AD+LSYG+QR Sbjct: 97 VVVGMHRHLDYGAPGLLLSLPGYRAAERRARDRALELLSWVKLDHKAGDIADNLSYGDQR 156 Query: 131 KLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLC 190 KLE ARALAT+PKLLLLDEPVAGMN EK +LM+EI NI+ RG+TIFMIEHDMRFVMGLC Sbjct: 157 KLELARALATEPKLLLLDEPVAGMNTGEKVDLMAEIENIRARGYTIFMIEHDMRFVMGLC 216 Query: 191 ERIAVLNFGKIIAEGTPDQIKNNQEVIEAYL 221 ERIAVLNFG+IIAEG P+ I+NN +VIEAYL Sbjct: 217 ERIAVLNFGRIIAEGPPEAIRNNPQVIEAYL 247 >TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 284 Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/234 (52%), Positives = 156/234 (66%), Gaps = 20/234 (8%) Query: 11 GAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLEN 70 GAGKTTVFN+ITG+ + G I FND DI + P++IT GIARTFQNIR+F +MT+LEN Sbjct: 47 GAGKTTVFNVITGIYTPTKGRIVFNDIDITGLRPYQITHLGIARTFQNIRLFSDMTVLEN 106 Query: 71 VVVGMHDHL-NYGVASMLLNLG------------------GFRNAEKEARERALELLSWV 111 V+V H L N +L+ G G+ EKE ERA +L+ V Sbjct: 107 VLVAQHHVLSNPDADRILVKHGKPRKGHGRFWFWRAVTKIGYLKKEKEMVERAKDLIKRV 166 Query: 112 RLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQ 171 L+ + A SL YGEQRKLE ARALAT+PKL+LLDEP AGMNP E +LM I I++ Sbjct: 167 GLEKVMYEKASSLPYGEQRKLEIARALATEPKLILLDEPAAGMNPKETEDLMEFIKQIRK 226 Query: 172 R-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 224 T+ +IEHDM+ VMG+CERI V+++G+IIAEGTP +I+N+ VIEAYLG+E Sbjct: 227 DFNLTVLLIEHDMKVVMGICERIIVMDYGRIIAEGTPKEIQNDPRVIEAYLGRE 280 >SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 254 Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 111/215 (51%), Positives = 146/215 (67%), Gaps = 1/215 (0%) Query: 11 GAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLEN 70 GAGKTT+FNL+TG+ S G++ + + +P+KI G+ RTFQNIR+FK++T+L+N Sbjct: 39 GAGKTTLFNLLTGVYEPSEGTVTLDGHLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDN 98 Query: 71 VVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQR 130 V++ +H V + L L F +EKE + +ALELL LD A LA +LSYG+QR Sbjct: 99 VLIAFGNHHKQHVFTSFLRLPAFYKSEKELKAKALELLKIFDLDGDAETLAKNLSYGQQR 158 Query: 131 KLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGL 189 +LE RALAT+PK+L LDEP AGMNP E EL I IK TI +IEHDM VM + Sbjct: 159 RLEIVRALATEPKILFLDEPAAGMNPQETAELTELIRRIKDEFKITIMLIEHDMNLVMEV 218 Query: 190 CERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 224 ERI VL +G++IA+GTPD+IK N+ VIEAYLG E Sbjct: 219 TERIYVLEYGRLIAQGTPDEIKTNKRVIEAYLGGE 253 >FN1429 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 260 Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/216 (51%), Positives = 158/216 (73%), Gaps = 1/216 (0%) Query: 11 GAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLEN 70 GAGKTTVFN++TG+ ASSG + +++ + + ++G+ARTFQNIR+FK +++L+N Sbjct: 43 GAGKTTVFNILTGVYNASSGKYILDGENVIKTSTSALVKKGLARTFQNIRLFKYLSVLDN 102 Query: 71 VVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQR 130 VV + + YG+ S +L L + EKEA+E+A+ LL LD A+M A +L YGEQR Sbjct: 103 VVAAYNFRMKYGILSGMLRLPSYWKEEKEAKEKAMALLKIFDLDKYANMHAGNLPYGEQR 162 Query: 131 KLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGL 189 KLE ARA+AT+PK+LLLDEP AGMNP E +LM+ I I+ + G + +IEHDM+ V+G+ Sbjct: 163 KLEIARAMATEPKILLLDEPAAGMNPKETEDLMNTIKLIRDKFGIAVLLIEHDMKLVLGI 222 Query: 190 CERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKEE 225 CER+ VLN+GKI+A G P+++ NN +VIEAYLGKEE Sbjct: 223 CERLVVLNYGKILASGKPNEVINNPQVIEAYLGKEE 258 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 259 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 110/215 (51%), Positives = 147/215 (68%), Gaps = 1/215 (0%) Query: 11 GAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLEN 70 GAGKTT+FNLIT L+ SSG + + + I + PH+I GIARTFQNIR+F E++ LEN Sbjct: 45 GAGKTTLFNLITALIPPSSGELIYQNKAIAKLRPHQIASLGIARTFQNIRLFGELSALEN 104 Query: 71 VVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQR 130 V++ H H + + +L L E +RE+ALELL V L +A A + +YG+QR Sbjct: 105 VIIARHLHTKSTIFTGVLGLPPAPKEESRSREKALELLEMVGLSDRAQEKARNFAYGDQR 164 Query: 131 KLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGL 189 +LE ARALA +P++LLLDEP AGMNP+EK +L I I+ R TI +IEH + VMGL Sbjct: 165 RLEIARALALEPQILLLDEPAAGMNPSEKQQLSDFIREIRDRFNLTIILIEHHVPLVMGL 224 Query: 190 CERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 224 C+RIAVL+FG++IA G P ++N+ VIEAYLG E Sbjct: 225 CDRIAVLDFGQLIALGEPSVVRNDPAVIEAYLGNE 259