BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0029.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport... 337 1e-92 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 275 5e-74 SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ... 252 4e-67 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 250 2e-66 DR2118 [E] COG0410 ABC-type branched-chain amino acid transport ... 242 6e-64 >RSp0017 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 241 Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/238 (71%), Positives = 202/238 (84%), Gaps = 4/238 (1%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV-KAQ---RG 65 +L+V+ L V+YGHI AVKGI +LN GEIT+LVGANGAGKST+LLA+SGL+ K+Q RG Sbjct: 4 LLEVKGLEVSYGHIAAVKGIDFALNAGEITSLVGANGAGKSTTLLALSGLIPKSQGEVRG 63 Query: 66 RVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEW 125 ++L G D+ Q S H+ VE G+VQVAEGRATLTT+TV ENL LGAYTRKD+ +A DLE Sbjct: 64 QILFEGADVTQWSAHKRVERGIVQVAEGRATLTTMTVRENLELGAYTRKDRSQIASDLER 123 Query: 126 VYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRI 185 V+ LFP LK R G+AGNLSGGEQQMLAIGRALMA+P+VLLLDEPSMGLAP+I+QEIFRI Sbjct: 124 VFHLFPRLKERIDGMAGNLSGGEQQMLAIGRALMARPRVLLLDEPSMGLAPIIVQEIFRI 183 Query: 186 VQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 ++ IN G+T+ LVEQNVRQAL+IAQRGYVLETG+IVL DSG LLGNP+V+EAYLGG Sbjct: 184 LRTINAEGLTIFLVEQNVRQALKIAQRGYVLETGQIVLADSGQRLLGNPRVLEAYLGG 241 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 275 bits (704), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 132/233 (56%), Positives = 175/233 (75%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L+V+ L V YG I A+KGI L + G+I L+GANGAGK+T+L AI+GLV+AQ+G+++ Sbjct: 5 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 64 Query: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSL 129 +GQD+ H I G+ V EGR LTV ENL +GAY RKDK+G+ RDLEW++SL Sbjct: 65 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 124 Query: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FP LK R L G LSGGEQQMLAIGRALM++PK+L++DEPS+GLAP+++ E+F ++Q+I Sbjct: 125 FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 184 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 N+ G T+LLVEQN AL++A GYVLETG+IVLE + LL N V +AYLG Sbjct: 185 NQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLG 237 >SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 236 Score = 252 bits (644), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/234 (54%), Positives = 172/234 (73%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L+VE+L+V YG I+AV+ +S +NEGE+ +L+GANGAGK+T L +SGLV+ G++ Sbjct: 3 MLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEF 62 Query: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSL 129 GQ++ +M +IV SG+ QV EGR LTV ENL +GA+ +K+++ +L+ V+S Sbjct: 63 LGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFSR 122 Query: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FP L+ R A LSGGEQQMLA+GRALM+ PK+LLLDEPSMGLAP+ IQEIF I+Q+I Sbjct: 123 FPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDI 182 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 K G TVLL+EQN +AL I+ RGYVLETG+IVL +G L + +V +AYLGG Sbjct: 183 QKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGKELASSEEVRKAYLGG 236 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 171/235 (72%), Gaps = 1/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L+V+DL V Y +I+A+KGISL +NEGE+ +++GANGAGK+T+L ISGL+ + G ++ Sbjct: 3 MLEVKDLQVFYDNIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSIIF 62 Query: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDK-DGVARDLEWVYS 128 G++LL+ H I + G+ QV EGR + L V++NL LG +T KD + D Y Sbjct: 63 EGKNLLKEKAHNICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTVKDSAEKKEEDRANFYK 122 Query: 129 LFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQE 188 +FP + R LAG LSGGEQQMLA+GRALM++PK+L+LDEPSMGL+PL ++EIF ++++ Sbjct: 123 VFPRMSERKNQLAGTLSGGEQQMLAMGRALMSRPKLLILDEPSMGLSPLFVKEIFEVIKQ 182 Query: 189 INKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 + + G T+LLVEQN + AL I+ R YV+ETG+IVLE +LL N +V +AYLGG Sbjct: 183 LKEKGTTILLVEQNAKMALSISDRAYVIETGEIVLEGKAEDLLYNDRVKKAYLGG 237 >DR2118 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 236 Score = 242 bits (617), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 117/234 (50%), Positives = 168/234 (71%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L++E+L V YG I+AV+G+SL + EGE+ L+GANGAGK+T+L A+S +V+ G + Sbjct: 3 LLEIENLGVNYGAIQAVRGLSLEVQEGEVVTLIGANGAGKTTTLRAVSRMVRPVAGIIRF 62 Query: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSL 129 G+D+ ++ P V+ G+ Q EGR L ++++NL LGAY R D+ G+ DL+ +Y Sbjct: 63 GGRDITRIPPDEAVKIGIAQSPEGRQVLARQSIQDNLELGAYVRSDRAGIQADLQRMYDR 122 Query: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FP L R LAG LSGGEQQMLAI RALM++PK+LLLDEPS+GLAPLI++EIF I++E+ Sbjct: 123 FPRLGERRTQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPLIVREIFTIIREL 182 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 N+ GMT+LLVEQN + A+ + R YVLE G++ + L+ + +V+ AYLGG Sbjct: 183 NEQGMTILLVEQNAKLAMNASHRTYVLEAGQLTFSGVSSELVNDERVLHAYLGG 236