BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0028.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport... 342 4e-94 TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ... 258 7e-69 SP0752 [E] COG0411 ABC-type branched-chain amino acid transport ... 253 2e-67 alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 252 6e-67 FN1429 [E] COG0411 ABC-type branched-chain amino acid transport ... 251 8e-67 >RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 265 Score = 342 bits (878), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 179/247 (72%), Positives = 207/247 (83%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +L+L ISK FGGL VLQ VN V QG IFGLIGPNGAGKTTVFNLITGLL + G++ F Sbjct: 1 MLKLASISKRFGGLSVLQDVNIEVPQGTIFGLIGPNGAGKTTVFNLITGLLEPTGGTLTF 60 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 + PH+IT+ GIARTFQNIR+FKEMTLLENVVVGMH HL+YG +LL+L G+R Sbjct: 61 GGTSLVGKKPHQITQMGIARTFQNIRIFKEMTLLENVVVGMHRHLDYGAPGLLLSLPGYR 120 Query: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 AE+ AR+RALELLSWV+LDHKA +AD+LSYG+QRKLE ARALAT+PKLLLLDEPVAGM Sbjct: 121 AAERRARDRALELLSWVKLDHKAGDIADNLSYGDQRKLELARALATEPKLLLLDEPVAGM 180 Query: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 N EK +LM+EI NI+ RG+TIFMIEHDMRFVMGLCERIAVLNFG+IIAEG P+ I+NN Sbjct: 181 NTGEKVDLMAEIENIRARGYTIFMIEHDMRFVMGLCERIAVLNFGRIIAEGPPEAIRNNP 240 Query: 242 EVIEAYL 248 +VIEAYL Sbjct: 241 QVIEAYL 247 >TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 284 Score = 258 bits (660), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 138/270 (51%), Positives = 179/270 (66%), Gaps = 20/270 (7%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL L+ ++ FGGL + +R+GE+ GLIGPNGAGKTTVFN+ITG+ + G I F Sbjct: 11 LLLLDHVTMQFGGLVAVDDFTNEIREGELVGLIGPNGAGKTTVFNVITGIYTPTKGRIVF 70 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHL-NYGVASMLLNLG-- 118 ND DI + P++IT GIARTFQNIR+F +MT+LENV+V H L N +L+ G Sbjct: 71 NDIDITGLRPYQITHLGIARTFQNIRLFSDMTVLENVLVAQHHVLSNPDADRILVKHGKP 130 Query: 119 ----------------GFRNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFA 162 G+ EKE ERA +L+ V L+ + A SL YGEQRKLE A Sbjct: 131 RKGHGRFWFWRAVTKIGYLKKEKEMVERAKDLIKRVGLEKVMYEKASSLPYGEQRKLEIA 190 Query: 163 RALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIA 221 RALAT+PKL+LLDEP AGMNP E +LM I I++ T+ +IEHDM+ VMG+CERI Sbjct: 191 RALATEPKLILLDEPAAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERII 250 Query: 222 VLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 251 V+++G+IIAEGTP +I+N+ VIEAYLG+E Sbjct: 251 VMDYGRIIAEGTPKEIQNDPRVIEAYLGRE 280 >SP0752 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 254 Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/251 (50%), Positives = 171/251 (68%), Gaps = 1/251 (0%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL++ ++K+FGGL + V + +GE+ GLIGPNGAGKTT+FNL+TG+ S G++ Sbjct: 3 LLEVKQLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTL 62 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 + + +P+KI G+ RTFQNIR+FK++T+L+NV++ +H V + L L F Sbjct: 63 DGHLLNGKSPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKQHVFTSFLRLPAFY 122 Query: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 +EKE + +ALELL LD A LA +LSYG+QR+LE RALAT+PK+L LDEP AGM Sbjct: 123 KSEKELKAKALELLKIFDLDGDAETLAKNLSYGQQRRLEIVRALATEPKILFLDEPAAGM 182 Query: 182 NPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 NP E EL I IK TI +IEHDM VM + ERI VL +G++IA+GTPD+IK N Sbjct: 183 NPQETAELTELIRRIKDEFKITIMLIEHDMNLVMEVTERIYVLEYGRLIAQGTPDEIKTN 242 Query: 241 QEVIEAYLGKE 251 + VIEAYLG E Sbjct: 243 KRVIEAYLGGE 253 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 259 Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 127/252 (50%), Positives = 172/252 (68%), Gaps = 1/252 (0%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 ++L+ +++ FGGL + V+F V EIFGLIGPNGAGKTT+FNLIT L+ SSG + Sbjct: 8 VILEAKSLTRRFGGLVAVNNVSFTVNHYEIFGLIGPNGAGKTTLFNLITALIPPSSGELI 67 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 + + I + PH+I GIARTFQNIR+F E++ LENV++ H H + + +L L Sbjct: 68 YQNKAIAKLRPHQIASLGIARTFQNIRLFGELSALENVIIARHLHTKSTIFTGVLGLPPA 127 Query: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 E +RE+ALELL V L +A A + +YG+QR+LE ARALA +P++LLLDEP AG Sbjct: 128 PKEESRSREKALELLEMVGLSDRAQEKARNFAYGDQRRLEIARALALEPQILLLDEPAAG 187 Query: 181 MNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKN 239 MNP+EK +L I I+ R TI +IEH + VMGLC+RIAVL+FG++IA G P ++N Sbjct: 188 MNPSEKQQLSDFIREIRDRFNLTIILIEHHVPLVMGLCDRIAVLDFGQLIALGEPSVVRN 247 Query: 240 NQEVIEAYLGKE 251 + VIEAYLG E Sbjct: 248 DPAVIEAYLGNE 259 >FN1429 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 260 Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 180/252 (71%), Gaps = 1/252 (0%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL DIS +FG L+ + N + GE+ GLIGPNGAGKTTVFN++TG+ ASSG Sbjct: 7 LLVAKDISISFGALKAVNNFNLEINSGELIGLIGPNGAGKTTVFNILTGVYNASSGKYIL 66 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 + +++ + + ++G+ARTFQNIR+FK +++L+NVV + + YG+ S +L L + Sbjct: 67 DGENVIKTSTSALVKKGLARTFQNIRLFKYLSVLDNVVAAYNFRMKYGILSGMLRLPSYW 126 Query: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 EKEA+E+A+ LL LD A+M A +L YGEQRKLE ARA+AT+PK+LLLDEP AGM Sbjct: 127 KEEKEAKEKAMALLKIFDLDKYANMHAGNLPYGEQRKLEIARAMATEPKILLLDEPAAGM 186 Query: 182 NPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 NP E +LM+ I I+ + G + +IEHDM+ V+G+CER+ VLN+GKI+A G P+++ NN Sbjct: 187 NPKETEDLMNTIKLIRDKFGIAVLLIEHDMKLVLGICERLVVLNYGKILASGKPNEVINN 246 Query: 241 QEVIEAYLGKEE 252 +VIEAYLGKEE Sbjct: 247 PQVIEAYLGKEE 258