BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0027.p         (100 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0015 [E] COG4177 ABC-type branched-chain amino acid transport...   129   2e-30
DR2120 [E] COG4177 ABC-type branched-chain amino acid transport ...    70   9e-13
FN1430 [E] COG4177 ABC-type branched-chain amino acid transport ...    67   1e-11
AF0824 [E] COG4177 ABC-type branched-chain amino acid transport ...    63   2e-10
SP0751 [E] COG4177 ABC-type branched-chain amino acid transport ...    59   4e-09

>RSp0015 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Rso Ralstonia solanacearum
          Length = 299

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 1   VAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLRHFKD 60
           +AG LNAH TF IGP  +GF+  V+ILTMA+ GGT+ L GP++GS ILSLLPE+LR FKD
Sbjct: 190 LAGALNAHLTFFIGPAEFGFDRGVEILTMAILGGTNGLTGPVLGSVILSLLPELLRAFKD 249

Query: 61  FRLAINGLILILVVLYLPKGIWDPRRIRAFLG 92
           FRL +NGLIL+L+VL+LPKGIWDP R   + G
Sbjct: 250 FRLVVNGLILMLIVLFLPKGIWDPARFARWFG 281


>DR2120 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Dra Deinococcus radiodurans
          Length = 310

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%)

Query: 3   GGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLRHFKDFR 62
           G L+A F  T       F+ ++ +L   + GG+ N+ GP++G  +L+ +PEVLR   D+R
Sbjct: 205 GALSAPFLNTWNAKQGTFDASIAVLAFVLIGGSRNMWGPVVGGALLTAVPEVLRFLADWR 264

Query: 63  LAINGLILILVVLYLPKGI 81
           L INGL+L++  LYLP+GI
Sbjct: 265 LVINGLVLVVASLYLPQGI 283


>FN1430 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Fnu Fusobacterium nucleatum
          Length = 285

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 55/88 (62%)

Query: 1   VAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLRHFKD 60
           +AGG+ AH    +G   + +  +++IL M V GG  +  G ++ + +L++LPEVLR F +
Sbjct: 178 IAGGIYAHNLGILGAKQFDYNYSINILVMVVLGGMGSFTGSILSAIVLTILPEVLRSFAE 237

Query: 61  FRLAINGLILILVVLYLPKGIWDPRRIR 88
           +R+ +  LILI+++L+ PKG+      +
Sbjct: 238 YRMIVYPLILIIMMLFRPKGLLGREEFQ 265


>AF0824 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Afu Archaeoglobus fulgidus
          Length = 323

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 1   VAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLRHFKD 60
           VAG   + +  +I P+   F N+   LT  +FGG   ++GP IG+ +++L+ EV      
Sbjct: 219 VAGAFYSAYIGSIFPDITSFVNSFAFLTAIIFGGAGTMLGPFIGTAVVTLINEVFFTLAQ 278

Query: 61  FRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKKVK 100
           + + + G++ +L +L++PKG+     + A+  R AEK  K
Sbjct: 279 YTVLVQGIVFLLAILFMPKGV-----MGAYYSRKAEKGEK 313


>SP0751 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Spn Streptococcus pneumoniae TIGR4
          Length = 318

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 1   VAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLPEVLRHFKD 60
           +AG L A F  ++ P +Y F N++++L + VFGG  ++ G ++ + +L +L  +L+    
Sbjct: 217 IAGSLQAGFIGSVVPKDYTFINSINVLIIVVFGGLGSITGAIVSAIVLGILNMLLQDVAS 276

Query: 61  FRLAINGLILILVVLYLPKGI---WDPRRIRAFLGRNAEKK 98
            R+ I  L L+LV+++ P G+   W+    R F     E++
Sbjct: 277 VRMIIYALALVLVMIFRPGGLLGTWELSLSRFFKKSKKEEQ 317