BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0025.p (385 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport... 467 e-131 DR2122 [E] COG0683 ABC-type branched-chain amino acid transport ... 207 4e-53 SP0749 [E] COG0683 ABC-type branched-chain amino acid transport ... 145 1e-34 FN1432 [E] COG0683 ABC-type branched-chain amino acid transport ... 145 1e-34 alr2535 [E] COG0683 ABC-type branched-chain amino acid transport... 138 2e-32 >RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 386 Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/359 (68%), Positives = 280/359 (77%), Gaps = 1/359 (0%) Query: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 DIK+GVAEAL+G AA+YG AI+NGF LA++EINA GG+NG K+ALVIEDEQGKKEEAINV Sbjct: 29 DIKIGVAEALSGGAAQYGAAIRNGFQLAADEINAGGGINGSKIALVIEDEQGKKEEAINV 88 Query: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVME 146 FKKLIFQDKV VFGPTLSNSA AADPIA AK VVFGTSNTADGIT++G FRNSV E Sbjct: 89 FKKLIFQDKVALVFGPTLSNSAQAADPIAQGAKTVVFGTSNTADGITSIGDHVFRNSVTE 148 Query: 147 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEHQKIPVTTTEAYAKGDV 206 ADVLP T++ VK G+KKVAV+YGNDD FTKSGYD FK LE KIPVT TE +AKGDV Sbjct: 149 ADVLPATIQTVVKKAGVKKVAVLYGNDDVFTKSGYDNFKKALEDLKIPVTATETFAKGDV 208 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DFKAQLTKIKA NPDAIV S L E I++Q R LG+ P IGGNG+NS K+F++A+D Sbjct: 209 DFKAQLTKIKATNPDAIVLSALIAEGGPIMVQARQLGLNVPIIGGNGMNSVKVFDLARDK 268 Query: 267 GDNTLMGSPWSAENQTPANKAFITAYKAKFGADPDQFAAQAYDAMYILADALKNVKLSGN 326 DN +GSPWS EN TP N FITAY A++ A PDQFAAQAYDAM+I A ALK VK SGN Sbjct: 269 SDNLWVGSPWSIENHTPENSKFITAYTARYKAAPDQFAAQAYDAMHIAAQALKTVKFSGN 328 Query: 327 LAKDRDALRAALPAVKIDGATGKFAFRAAPAVAGKQVGFDADQEAIVNIAKGGKFVLLK 385 L DR A+R ALPAVK GATG FAFR A GK G+DA Q IV++ K GK+ + K Sbjct: 329 LEADRKAIRDALPAVKHTGATGAFAFRQVTA-RGKPAGYDAVQTPIVSVTKAGKYTIEK 386 >DR2122 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 387 Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 184/331 (55%), Gaps = 6/331 (1%) Query: 28 IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINVF 87 I LGVA A T + +G G LA + INA GGVNG + LV +D G + AIN F Sbjct: 27 ISLGVAVAQTSNVSLFGQEQVAGAKLAEQLINAAGGVNGTPIKLVYQDAGGDENGAINAF 86 Query: 88 KKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVMEA 147 + LI +++VL + GPTLS AFAADPIA AKV V G SNTA G+ +G + R S A Sbjct: 87 QNLINKNRVLGIVGPTLSQQAFAADPIAERAKVPVLGISNTAKGVPQIGTYVARVSAPIA 146 Query: 148 DVLPVTVKAAVK-HFGIKKVAVIYGNDDAFTKSGYDVFKATLEHQKIPVTTTEAYAKGDV 206 + P VK A+K + IKKVAV+Y +DAF+ S + F++TL+ Q + + T + D Sbjct: 147 VIAPAAVKQALKLNPKIKKVAVMYAQNDAFSVSETETFQSTLKAQGLNIVTVQKSLTTDT 206 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DF Q+T + D +V S LA + NI+ Q R G K +GGNG N+ +F + + Sbjct: 207 DFTTQVTAVINSGADLVVVSALAADGGNIVKQLRQFGYKGLIVGGNGFNTANVFPVCQKD 266 Query: 267 GDNTLMGSPWSAENQTPANKAFITAYKAKFGADPDQFAAQAYDAMYILADALKNV----K 322 D L+ +S ++ N+ F++ Y+ + DP QFAAQAY + + DALK + K Sbjct: 267 CDGVLVAQAYSPTQKSAVNQKFVSEYRKLYKKDPPQFAAQAYAGIQVFVDALKVIDKKKK 326 Query: 323 LS-GNLAKDRDALRAALPAVKIDGATGKFAF 352 LS +LA R L + A + D G+ F Sbjct: 327 LSTWDLAALRTELNKQVLAGQYDTPLGELRF 357 >SP0749 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Spn Streptococcus pneumoniae TIGR4 Length = 386 Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 168/333 (50%), Gaps = 19/333 (5%) Query: 28 IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINVF 87 IK+G +G A YG A + G LA +EINA GG++G ++ +V +D + + EA +V Sbjct: 41 IKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVT 100 Query: 88 KKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVMEA 147 L+ Q KV AV GP S + AA A A V + S T DG+T + F + ++ Sbjct: 101 TNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDS 160 Query: 148 DVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEHQKIPVTTTEAYAKGDVD 207 + + KKV + N + K + K+ E K + E + GD D Sbjct: 161 FQGKIISNYVSEKLNAKKVVLYTDNASDYAKG---IAKSFRESYKGEIVADETFVAGDTD 217 Query: 208 FKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAK-DA 266 F+A LTK+K + DAIV EA I+ Q R +G+ +P +GG+G N + + A + Sbjct: 218 FQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATAEK 277 Query: 267 GDNTLMGSPWSAENQTPAN-KAFITAYKAKFGADPDQFAAQAYDAMYILADALKNVKLSG 325 N S +S + A KAF+ AY+AK+ +P FAA AYD+++++A+A K K SG Sbjct: 278 ASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKGAKNSG 337 Query: 326 ----NLAKDRDALRAALPAVKIDGATGKFAFRA 354 NLAK +D +G TG+ +F A Sbjct: 338 EIKNNLAKTKD----------FEGVTGQTSFDA 360 >FN1432 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Fnu Fusobacterium nucleatum Length = 383 Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 28/365 (7%) Query: 6 MLKTIPALLIGATLSQAALAAD------------IKLGVAEALTGPAAKYGVAIKNGFTL 53 M K + L+GA+L A + IK+G LTG A YG++ NG L Sbjct: 1 MKKKLLTTLLGASLLLVACGGEKTEEKSTKEDETIKIGAMGPLTGAVAIYGISATNGLKL 60 Query: 54 ASEEINAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADP 113 A +EINA GG+ G ++ L + DE+G EA+N + KL+ V+ + G S + A Sbjct: 61 AVDEINANGGILGKQVELNLLDEKGDSTEAVNAYNKLVDWGMVVLI-GDVTSKPSVAVAE 119 Query: 114 IANAAKVVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGND 173 +A + + + T IT G FR + V K A G K VA++ N Sbjct: 120 VAAQDGIPMITPTGTQLNITEAGSNIFRVCFTDPYQGVVLAKFAKDKLGAKTVAIMSNNS 179 Query: 174 DAFTKSGYDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAA 233 ++ + F E Q I V E Y+ GD DFKAQLTKI NPD + E+ Sbjct: 180 SDYSDGVANAFVTEAEKQGIQVVAREGYSDGDKDFKAQLTKIAQQNPDILFIPDYYEQDG 239 Query: 234 NIILQTRALGMKQPFIGGNGLN------SPKLFEIAKDAGDNTLMGSPWSAENQTPANKA 287 I +Q R +G+K +G +G + P + +D + +S ++ + Sbjct: 240 LIAIQAREVGLKSVIVGSDGWDGVVKTVDPSSYAAIEDV----YFANHYSTKDSNEKIQN 295 Query: 288 FITAYKAKFGADPDQFAAQAYDAMYILADALKNVKLSGNLAKDRDALRAALPAVKIDGAT 347 FI YK K+ +P F+A +YD Y+L A++ + D++A+ A+ ++ +G T Sbjct: 296 FIKNYKEKYNDEPSAFSALSYDTAYLLKAAIEKAGTT-----DKEAVTKAIKEIQFEGIT 350 Query: 348 GKFAF 352 G+ F Sbjct: 351 GQLTF 355 >alr2535 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Nos Nostoc sp. PCC 7120 Length = 268 Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 140/270 (51%), Gaps = 8/270 (2%) Query: 122 VFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHF-GIKKVAVIYGNDDAFTKSG 180 + G SNTA GI +G + R S + V P +VKAA+K IKKVAV + +DAF+KS Sbjct: 1 MIGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSE 60 Query: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 ++F+ T++ Q + + T + + D DF++Q T PD ++ S LA + N++ Q R Sbjct: 61 TEIFQQTIKEQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLR 120 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADP 300 LG + IGGNGLN+ +F + K D L+ +S E NKAF AY ++ +P Sbjct: 121 ELGYQGAIIGGNGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEP 180 Query: 301 DQFAAQAYDAMYILADALKNV----KLSG-NLAKDRDALRAALPAVKIDGATGKFAFRAA 355 QF+AQA+ A+ + ++LK + K+S L + R L L K + G+ +F Sbjct: 181 PQFSAQAFAAVQVYVESLKALDSMNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPI 240 Query: 356 PAVAGKQVGFDADQEAIVNIAKGGKFVLLK 385 V Q F Q + GKF LK Sbjct: 241 GEVV--QQDFYVAQIKMEKDGSQGKFTFLK 268