BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0012.p         (108 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal...    97   9e-21
YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer...    96   2e-20
RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    96   3e-20
trg [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri...    89   3e-18
Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher...    89   4e-18

>STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella
           typhimurium LT2
          Length = 541

 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 68/89 (76%)

Query: 3   AGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAA 62
           AG+TM ++V +V+RV+DI+ DI+ AS EQS GI QV+QAI  MD+ TQQNA+LVEEA+AA
Sbjct: 450 AGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASAA 509

Query: 63  SQSLREQAKGLAQAVSVFRLERSAAAVKP 91
           ++SL EQA  L QAV  FRL  + A ++ 
Sbjct: 510 ARSLEEQAARLTQAVDAFRLHDTGATMRS 538


>YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia
           pestis
          Length = 649

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 63/81 (77%)

Query: 2   QAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAA 61
            AGNTME++V SV  V DI+ +I+ AS EQS GI QV+ AI  MD TTQQNAALVEE+AA
Sbjct: 531 NAGNTMEEIVRSVSHVRDIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAA 590

Query: 62  ASQSLREQAKGLAQAVSVFRL 82
           A+ SL EQA  LAQAV+VFRL
Sbjct: 591 AADSLAEQAILLAQAVAVFRL 611


>RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 515

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 68/83 (81%)

Query: 2   QAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAA 61
           +AG TMEQ+V ++QRVS+IV +IS AS EQS G++QV QA+  MD+ TQQNAALVE++AA
Sbjct: 433 RAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAA 492

Query: 62  ASQSLREQAKGLAQAVSVFRLER 84
           A+ SL+ QA+ L QAV+VF+L R
Sbjct: 493 AASSLQGQAQQLVQAVAVFKLAR 515


>trg [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia
           coli K12
          Length = 546

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query: 3   AGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAA 62
           AG TM  +V +V  V+ I+++I+ AS EQS GI QV+QAI  MD+ TQQNA+LVEEA+AA
Sbjct: 446 AGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAA 505

Query: 63  SQSLREQAKGLAQAVSVFRLERSAAAVKP 91
           + SL EQA  L +AV VFRL + + + +P
Sbjct: 506 AVSLEEQAARLTEAVDVFRLHKHSVSAEP 534


>Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 546

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 6/101 (5%)

Query: 3   AGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAA 62
           AG TM  +V +V  V+ I+++I+ AS EQS GI QV+QAI  MD+ TQQNA+LVEEA+AA
Sbjct: 446 AGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAA 505

Query: 63  SQSLREQAKGLAQAVSVFRLERSA------AAVKPVVAAPV 97
           + SL EQA  L +AV VFRL + +       A +PV  APV
Sbjct: 506 AVSLEEQAARLTEAVDVFRLNKQSVLAEPRGAGEPVSFAPV 546