BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0011.p         (187 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    59   5e-09

>RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 329

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 3   MVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAAAEHLQ----- 57
           +V L   GK D     M+++  P    L+     +  Y  +  RQ    AA+  Q     
Sbjct: 22  IVQLALDGKRDEAIQKMDDECRPLLVELIQATTAYARYTRE--RQEQLVAADEAQYGQQR 79

Query: 58  -LSIYLTIAAATLVIVMVSV-LSLLLVRNIRHSLHAATELADAIGRGDLSSQIVLRGRDE 115
            L I L+IAA     V+V++   +L+ R+I   +  A  +A+ + RGDL S+I   G DE
Sbjct: 80  SLLIALSIAA-----VLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSRIDAEGTDE 134

Query: 116 VTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGQG 156
            +  + +L  M   L QI+ KV DS+ +I  A R IA+G  
Sbjct: 135 TSHRLAALADMNTRLTQIVDKVRDSSGSIAGAARPIAAGNA 175