BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0010.p         (98 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    83   1e-16
RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    80   1e-15
Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher...    79   3e-15
ECs2026 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc...    79   3e-15
trg [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri...    77   1e-14

>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 63/80 (78%), Gaps = 2/80 (2%)

Query: 1   VTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNLAQV 60
           VT IV+EISA+SREQS+G++QI++AI+ MD+ TQ+NA+LVE++A A+Q+LQDQA  LA +
Sbjct: 448 VTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADM 507

Query: 61  VGVFRLGRQAQLTGEEVTAQ 80
           V  F+L   A L+G    AQ
Sbjct: 508 VSTFKL--HADLSGRGRAAQ 525


>RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 515

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 52/68 (76%)

Query: 1   VTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNLAQV 60
           V+ IV EIS+AS EQS G+ Q+ QA+S MDE TQQNAALVEQ+AAA+ SLQ QA  L Q 
Sbjct: 448 VSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQA 507

Query: 61  VGVFRLGR 68
           V VF+L R
Sbjct: 508 VAVFKLAR 515


>Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 546

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 57/72 (79%)

Query: 1   VTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNLAQV 60
           VT I+ EI+AAS EQS G+ Q+SQAIS MD+ TQQNA+LVE+A+AA+ SL++QA  L + 
Sbjct: 460 VTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEA 519

Query: 61  VGVFRLGRQAQL 72
           V VFRL +Q+ L
Sbjct: 520 VDVFRLNKQSVL 531


>ECs2026 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia
           coli O157:H7
          Length = 546

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 57/72 (79%)

Query: 1   VTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNLAQV 60
           VT I+ EI+AAS EQS G+ Q+SQAIS MD+ TQQNA+LVE+A+AA+ SL++QA  L + 
Sbjct: 460 VTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEA 519

Query: 61  VGVFRLGRQAQL 72
           V VFRL +Q+ L
Sbjct: 520 VDVFRLNKQSVL 531


>trg [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia
           coli K12
          Length = 546

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 55/70 (78%)

Query: 1   VTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNLAQV 60
           VT I+ EI+AAS EQS G+ Q+SQAIS MD+ TQQNA+LVE+A+AA+ SL++QA  L + 
Sbjct: 460 VTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEA 519

Query: 61  VGVFRLGRQA 70
           V VFRL + +
Sbjct: 520 VDVFRLHKHS 529