BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0001.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI0647 [S] COG1285 Uncharacterized membrane protein Hin Haemophi...    95   7e-20
AGpAbx97 [S] COG1285 Uncharacterized membrane protein Atu Agroba...    95   9e-20
SMc00799 [S] COG1285 Uncharacterized membrane protein Sme Sinorh...    90   2e-18
slr0014 [S] COG1285 Uncharacterized membrane protein Syn Synecho...    90   2e-18
YPO2332 [S] COG1285 Uncharacterized membrane protein Ype Yersini...    87   2e-17

>HI0647 [S] COG1285 Uncharacterized membrane protein Hin Haemophilus
           influenzae
          Length = 238

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 103/151 (68%), Gaps = 6/151 (3%)

Query: 17  DYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTM----AAMNFALGA 72
           D+L IF ++L AM++G  IG++R L+ KP G+KT  ++A+ + ++T+    AA ++A  +
Sbjct: 15  DHLIIFSKMLLAMVLGSVIGLERELKRKPVGVKTCAIIAVTTCVLTIVSIQAAEHYAQVS 74

Query: 73  EDHNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAGWW 132
           E+   D +  A Q VI+GIGFLGAGVI+H ++ + + GLTTAA IW +A +GI  GAG+ 
Sbjct: 75  ENIRTDPMRLAAQ-VISGIGFLGAGVILH-KKNDAISGLTTAAIIWASAGIGIAAGAGFV 132

Query: 133 QVALMATGLILILFVIGRPLEQFLHRQWMRK 163
             A++AT +IL+   +   +++++HR+  R+
Sbjct: 133 FDAVIATVMILVSIRLSPLVQRWVHRKSQRR 163


>AGpAbx97 [S] COG1285 Uncharacterized membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 194

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 7/136 (5%)

Query: 11  PDATMTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFAL 70
           PDA+    + +  RL+ A ++G  +G +R  +G+  G++T  LVA+G+AL  +  +   +
Sbjct: 45  PDASAITRITV--RLVIAAVLGGVLGFERESKGRSAGLRTHMLVAVGAALFVLGPLQSGM 102

Query: 71  GAEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAG 130
              D     +SR +QGV+ GIGFLGAG II      +V GLTTAASIW TAA+G++ G G
Sbjct: 103 QIGD-----LSRVLQGVVQGIGFLGAGAIIIRSAQREVEGLTTAASIWATAAIGVMAGLG 157

Query: 131 WWQVALMATGLILILF 146
               A+++T ++L++ 
Sbjct: 158 MEVTAVLSTAIVLVIL 173


>SMc00799 [S] COG1285 Uncharacterized membrane protein Sme Sinorhizobium
           meliloti
          Length = 190

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 16/172 (9%)

Query: 14  TMTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNF----A 69
           T T Y  IF RL  A+L+G  IG++R  R +P G++T  LV+L SA+  + A+      +
Sbjct: 12  TQTPYPVIFARLFGAVLLGAMIGVEREKRQRPAGLRTHILVSLASAIFAVVAIESVHMKS 71

Query: 70  LGAEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGA 129
           L   +   D + R ++ V  G+ FL AG+I+  +   +V+GLTT A +W+  AVG+  G 
Sbjct: 72  LSGPEVRIDPI-RVVEAVTAGVAFLAAGMIVFSK--GEVKGLTTGAGMWLAGAVGLSVGF 128

Query: 130 GWWQV-ALMATGLILILFVIGRPLEQFLHRQWMRKSDDE---RADISAREED 177
           G+W + A  A   +++LFV+GR LE  L  QW  K+ DE       S + ED
Sbjct: 129 GFWLIAAFAAVASLVVLFVLGR-LEVAL--QW--KAPDEFYNTGSTSQKNED 175


>slr0014 [S] COG1285 Uncharacterized membrane protein Syn Synechocystis
          Length = 234

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 8/151 (5%)

Query: 17  DYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFALGAEDHN 76
           ++ E   RL  A ++G  +GI+R  R +  G++T  LVA+G+AL  + ++       +H+
Sbjct: 2   EWNESLLRLTVAFVLGSTLGIERQWRQRMAGLRTNTLVAIGAALFVIVSV-----LTNHD 56

Query: 77  RDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAGWWQVAL 136
             + +R    +++GIGFL  GVI+ E  T  V+GL TAA++W +AAVG +CG G +  A+
Sbjct: 57  -SSPTRIPAQIVSGIGFLAGGVILKEGLT--VKGLNTAATLWCSAAVGTLCGQGLFSEAV 113

Query: 137 MATGLILILFVIGRPLEQFLHRQWMRKSDDE 167
           + + ++L+  +  RPL  F++ Q M  ++ E
Sbjct: 114 LGSMMVLVANIALRPLSTFINHQPMHSTELE 144


>YPO2332 [S] COG1285 Uncharacterized membrane protein Ype Yersinia pestis
          Length = 219

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 10/142 (7%)

Query: 20  EIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFALGAED----- 74
           ++  R+  A ++G  IG++R LR K  G++T  LV +GSA+  + +     G ED     
Sbjct: 4   DLLLRITLAGILGGLIGLERQLRAKEAGLRTHILVGIGSAMFMIVS---KYGFEDLLVLE 60

Query: 75  HNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAGWWQV 134
           H     SR    V++G+GFLGAG I+ ++  + V+GLTTAA +WVTAA+G+V G+G +++
Sbjct: 61  HVSFDPSRVAAQVVSGMGFLGAGTIMIQK--QMVKGLTTAAGMWVTAAIGLVIGSGLYEI 118

Query: 135 ALMATGLILILFVIGRPLEQFL 156
            +  T + L++  + R L Q L
Sbjct: 119 GIYGTLMTLVVLEVFRQLSQRL 140