BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0176.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas ae...   143   1e-34
mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium...   142   2e-34
RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia sol...   140   9e-34
BMEI1429 [R] COG2351 Transthyretin-like protein Bme Brucella mel...   131   3e-31
SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobiu...   131   4e-31

>PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas aeruginosa
          Length = 126

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 86/117 (73%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60
           MG+L+THVLD   G PG G+K+ LY V      L+   +TN DGRCD+P+L GE  + G 
Sbjct: 10  MGRLTTHVLDSAHGCPGHGIKIELYRVEGQQLELIATTLTNHDGRCDQPVLQGEDFRPGV 69

Query: 61  YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117
           Y+LVF AGDY+ A+G  LPEP F+D+VV+ FGIA A  +YHVPL++SP++YSTYRGS
Sbjct: 70  YQLVFNAGDYYRARGVQLPEPAFLDQVVLRFGIASADDHYHVPLLISPYSYSTYRGS 126


>mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium loti
          Length = 124

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 2   GKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGKY 61
           G+L+THVLD   GKP AG+ +ALY +    +T LK   TN+DGRCD  LLAG   + G+Y
Sbjct: 10  GRLTTHVLDTATGKPAAGLSIALYRLDGSARTHLKTVATNADGRCDAALLAGAEFRAGEY 69

Query: 62  ELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117
           ELVFAAGDY   QG  LPEP F+D V I FG+A+A  +YHVPL++SP+ YSTYRGS
Sbjct: 70  ELVFAAGDYLRGQGTKLPEPAFLDSVPIRFGMAEAV-HYHVPLLISPYGYSTYRGS 124


>RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia solanacearum
          Length = 117

 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 82/117 (70%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60
           MG+L+THVLD   G PG  + + L+ +    +  +K   TN DGRC+ PLL GEALQ G 
Sbjct: 1   MGRLTTHVLDTAAGTPGKDLAITLFKIVNNLRQPIKTVRTNHDGRCEAPLLEGEALQAGI 60

Query: 61  YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117
           YEL FA GDY+ A G  LP+P F+D V + FG+ADA  +YHVPL+VSPW+YSTYRGS
Sbjct: 61  YELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVADAGAHYHVPLLVSPWSYSTYRGS 117


>BMEI1429 [R] COG2351 Transthyretin-like protein Bme Brucella melitensis
          Length = 123

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVGPGGK-TLLKQAVTNSDGRCDEPLLAGEALQVG 59
           MGKLSTHVLD   G P A +++ LY +   G   LLK+ VTN DGR D PLL+G+ ++ G
Sbjct: 6   MGKLSTHVLDTAHGTPAAAMRVELYRIAASGTPELLKRVVTNLDGRTDAPLLSGDEMRTG 65

Query: 60  KYELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117
            YEL F   +YF  +G  L    F+D + I FGIAD   NYHVPL+VSPW+YSTYRGS
Sbjct: 66  IYELQFHVAEYFEGRGAELAHEPFLDLIPIRFGIADEDGNYHVPLLVSPWSYSTYRGS 123


>SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobium meliloti
          Length = 129

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 80/116 (68%)

Query: 2   GKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGKY 61
           G+L+THVLD   G+P  G+K+ LY +    + L++   TNSDGR D PL+ G     G Y
Sbjct: 14  GRLTTHVLDTALGRPAHGLKIDLYRLEGDARHLIRTVHTNSDGRVDGPLMEGAGFATGTY 73

Query: 62  ELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117
           ELVF AGDYF + G  LP+P F++ V + FGIADA  +YHVPL++SP+ YSTYRGS
Sbjct: 74  ELVFHAGDYFRSAGVKLPDPAFLELVPLRFGIADADSHYHVPLLLSPYGYSTYRGS 129