BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0166.p         (183 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1678 [R] COG2252 Permeases Rso Ralstonia solanacearum              272   3e-73
NMA2056 [R] COG2252 Permeases NmA Neisseria meningitidis Z2491        235   3e-62
NMB0428 [R] COG2252 Permeases Nme Neisseria meningitidis MC58         235   4e-62
PA4719 [R] COG2252 Permeases Pae Pseudomonas aeruginosa               229   2e-60
PA1519 [R] COG2252 Permeases Pae Pseudomonas aeruginosa               229   2e-60

>RSp1678 [R] COG2252 Permeases Rso Ralstonia solanacearum
          Length = 434

 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 153/176 (86%)

Query: 1   MNALNKFFRLEENGTTIRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCIAA 60
           M+ L +FF+LEE+ T +RTE++AGLTTFLTMAYI+FVNP+IL DAG+P DAVFVATC+AA
Sbjct: 1   MSWLARFFKLEEHQTDVRTEVVAGLTTFLTMAYIVFVNPNILADAGVPHDAVFVATCVAA 60

Query: 61  AVGTLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLLVSVLR 120
           A+GT IMGLYANYPI +APGMGLNAYFAY+VVKGMGF WQAALGAV +SGCLF+LVS+ R
Sbjct: 61  AIGTAIMGLYANYPIAMAPGMGLNAYFAYSVVKGMGFTWQAALGAVFVSGCLFMLVSLFR 120

Query: 121 VRELIISSIPRSLRTAIPAGIGLFLGIISLKSAGIIAANPATFVTLGDLHQPPAXL 176
           +RE+II+ IP S+R AI AGIGLFLGI+SL+ AG++  NPAT V LGD+HQP   L
Sbjct: 121 IREMIINGIPHSIRIAITAGIGLFLGIVSLRGAGLVVGNPATLVALGDVHQPSVIL 176


>NMA2056 [R] COG2252 Permeases NmA Neisseria meningitidis Z2491
          Length = 436

 Score =  235 bits (600), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 138/173 (79%)

Query: 4   LNKFFRLEENGTTIRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCIAAAVG 63
           L+  F+L+ NGTT+RTEL+AGLTTFLTM YI+ VNP ILG+ GM   AVFVATCIA+A+G
Sbjct: 9   LDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNPLILGETGMDMGAVFVATCIASAIG 68

Query: 64  TLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLLVSVLRVRE 123
             +MG   NYPI LAPGMGLNAYF +AVVKGMG PWQ ALGAV ISG +F+L S  +VRE
Sbjct: 69  CFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGVPWQVALGAVFISGLIFILFSFFKVRE 128

Query: 124 LIISSIPRSLRTAIPAGIGLFLGIISLKSAGIIAANPATFVTLGDLHQPPAXL 176
           ++++++P  L+ +I AGIGLFL +ISLK AGII ANPAT V LGD+HQP A L
Sbjct: 129 MLVNALPMGLKMSIAAGIGLFLALISLKGAGIIVANPATLVGLGDIHQPSALL 181


>NMB0428 [R] COG2252 Permeases Nme Neisseria meningitidis MC58
          Length = 436

 Score =  235 bits (600), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 138/173 (79%)

Query: 4   LNKFFRLEENGTTIRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCIAAAVG 63
           L+  F+L+ NGTT+RTEL+AGLTTFLTM YI+ VNP ILG+ GM   AVFVATCIA+A+G
Sbjct: 9   LDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNPLILGETGMDMGAVFVATCIASAIG 68

Query: 64  TLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLLVSVLRVRE 123
             +MG   NYPI LAPGMGLNAYF +AVVKGMG PWQ ALGAV ISG +F+L S  +VRE
Sbjct: 69  CFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGVPWQVALGAVFISGLIFILFSFFKVRE 128

Query: 124 LIISSIPRSLRTAIPAGIGLFLGIISLKSAGIIAANPATFVTLGDLHQPPAXL 176
           ++++++P  L+ +I AGIGLFL +ISLK AGII ANPAT V LGD+HQP A L
Sbjct: 129 MLVNALPMGLKMSIAAGIGLFLALISLKGAGIIVANPATLVGLGDIHQPSALL 181


>PA4719 [R] COG2252 Permeases Pae Pseudomonas aeruginosa
          Length = 431

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 137/169 (81%)

Query: 4   LNKFFRLEENGTTIRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCIAAAVG 63
           L K F+L+ + TT+RTE+LAG+TTFLTMAYI+FVNPSILG+ GM K AVFVATC+AAA+G
Sbjct: 2   LEKLFQLKAHNTTVRTEILAGITTFLTMAYILFVNPSILGETGMDKGAVFVATCLAAAIG 61

Query: 64  TLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLLVSVLRVRE 123
           + IMGL ANYPI LAPGMGLNA+F Y VV  MG  WQ ALGAV IS  +F L+S+ R+RE
Sbjct: 62  STIMGLIANYPIALAPGMGLNAFFTYTVVLHMGHSWQVALGAVFISATMFFLLSIFRIRE 121

Query: 124 LIISSIPRSLRTAIPAGIGLFLGIISLKSAGIIAANPATFVTLGDLHQP 172
            II+SIP  LR+AI AGIGLFL +I+L++AGI+  NPAT + +GDL +P
Sbjct: 122 WIINSIPLPLRSAIAAGIGLFLALIALQNAGIVVDNPATLIGMGDLTKP 170


>PA1519 [R] COG2252 Permeases Pae Pseudomonas aeruginosa
          Length = 449

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 142/179 (79%), Gaps = 1/179 (0%)

Query: 4   LNKFFRLEENGTTIRTELLAGLTTFLTMAYIIFVNPSILGDAGMPKDAVFVATCIAAAVG 63
           L + F+L ++GTT+RTEL AGLTTF+TMAYIIFVNP+I+ DAG+   A FVATC+AAA+G
Sbjct: 22  LERLFKLRQHGTTVRTELAAGLTTFITMAYIIFVNPNIMADAGIDHGAAFVATCLAAALG 81

Query: 64  TLIMGLYANYPIGLAPGMGLNAYFAYAVVKGMGFPWQAALGAVLISGCLFLLVSVLRVRE 123
             +MGLYAN+P+GLAPGMGLNA+F Y VV  MG+ WQ ALGAV ISG +F+L++  RVRE
Sbjct: 82  CFLMGLYANWPVGLAPGMGLNAFFTYTVVGTMGYSWQIALGAVFISGVMFMLLTFSRVRE 141

Query: 124 LIISSIPRSLRTAIPAGIGLFLGIISLKSAGIIAANPATFVTLGDLHQPPAXLYCSYCF 182
            +++SIPRSLR A+ AG+GLFLG+I LK+AGI+ A+PAT + LG L   P  L  + CF
Sbjct: 142 WLLNSIPRSLRFAMGAGVGLFLGLIGLKTAGIVVASPATLIKLGHL-TSPGPLLAALCF 199