BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0155.p         (106 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1411 [GEPR] COG0477 Permeases of the major facilitator superfa...   119   2e-27
RSc1852 [GEPR] COG0477 Permeases of the major facilitator superf...    87   1e-17
YPO3268 [GEPR] COG0477 Permeases of the major facilitator superf...    64   1e-10
emrB [GEPR] COG0477 Permeases of the major facilitator superfami...    62   3e-10
ECs3548 [GEPR] COG0477 Permeases of the major facilitator superf...    62   3e-10

>VC1411 [GEPR] COG0477 Permeases of the major facilitator superfamily Vch
           Vibrio cholerae
          Length = 511

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 76/106 (71%)

Query: 1   MSFCRTMAGAIATSIVNTSWENDATYFHAELSGLVDRGGDAINTMMASGMSAEQATASLA 60
           M+F RT++GA ATS++NTSWE++  Y HAEL+GL D+ G A   M  SGMSAEQ  +++ 
Sbjct: 406 MNFIRTLSGAFATSMINTSWEHETRYVHAELAGLTDKAGVATQAMQNSGMSAEQTRSAMD 465

Query: 61  QTVQNQAVMLSTNHIFMMAAVSFSLAALAVWLAPKPTRVADTSAAH 106
             +QNQ+VM++TN +F++ A+ F  AA  +W APKP +  DTSA H
Sbjct: 466 WILQNQSVMVATNQLFIVIALIFVFAACMIWFAPKPKQAVDTSAVH 511


>RSc1852 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 512

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 1/107 (0%)

Query: 1   MSFCRTMAGAIATSIVNTSWENDATYFHAELSGLVDRGGDAINTMMASGMSAEQATASLA 60
           M+F RT++GA ATS++ T W++ AT  HAEL G+ D  G     +  +G + +    S+ 
Sbjct: 406 MNFLRTLSGAFATSLITTLWDDRATLHHAELVGVSDGDGSVRTMLEGAGSTLDAINQSID 465

Query: 61  QTVQNQAVMLSTNHIFMMAAVSFSLAALAVWLAPKPTR-VADTSAAH 106
           Q + +Q+VML+TN I     V+F LAA A+WLAPKP R VA  +  H
Sbjct: 466 QLLTSQSVMLATNDIMAWVGVAFVLAASAIWLAPKPRRTVAPGTGGH 512


>YPO3268 [GEPR] COG0477 Permeases of the major facilitator superfamily Ype
           Yersinia pestis
          Length = 511

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 2   SFCRTMAGAIATSIVNTSWENDATYFHAELSGLVD----RGGDAINTMMASGMSAEQATA 57
           +F RT+AG+I TSI  T W    +  HA+L+  V+        A   +   GMS +QA+A
Sbjct: 402 NFMRTLAGSIGTSITTTLWTQRESLHHAQLTEFVNPYNPNATQAYQELEKLGMSQQQASA 461

Query: 58  SLAQTVQNQAVMLSTNHIFMMAAVSFSLAALAVWLAPKP 96
            LA+ + NQ +++S N IF ++A  F +    +W A  P
Sbjct: 462 YLAREITNQGLIISANEIFWLSAGVFLMLLALIWFARPP 500


>emrB [GEPR] COG0477 Permeases of the major facilitator superfamily Eco
           Escherichia coli K12
          Length = 512

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 2   SFCRTMAGAIATSIVNTSWENDATYFHAELSGLVDRGGDAINTMMAS----GMSAEQATA 57
           +F RT+AG+I TSI  T W N  +  HA+L+  V+        M +     GM+ +QA+ 
Sbjct: 403 NFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASG 462

Query: 58  SLAQTVQNQAVMLSTNHIFMMAAVSFSLAALAVWLAPKP 96
            +AQ + NQ +++S N IF M+A  F +    VW A  P
Sbjct: 463 WIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPP 501


>ECs3548 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs
           Escherichia coli O157:H7
          Length = 512

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 2   SFCRTMAGAIATSIVNTSWENDATYFHAELSGLVDRGGDAINTMMAS----GMSAEQATA 57
           +F RT+AG+I TSI  T W N  +  HA+L+  V+        M +     GM+ +QA+ 
Sbjct: 403 NFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASG 462

Query: 58  SLAQTVQNQAVMLSTNHIFMMAAVSFSLAALAVWLAPKP 96
            +AQ + NQ +++S N IF M+A  F +    VW A  P
Sbjct: 463 WIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPP 501