BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0140.p (198 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4923 [R] COG1611 Predicted Rossmann fold nucleotide-binding pr... 233 1e-61 RSc2087 [R] COG1611 Predicted Rossmann fold nucleotide-binding p... 222 3e-58 Cgl2328 [R] COG1611 Predicted Rossmann fold nucleotide-binding p... 194 9e-50 BH3084 [R] COG1611 Predicted Rossmann fold nucleotide-binding pr... 189 3e-48 BS_yvdD [R] COG1611 Predicted Rossmann fold nucleotide-binding p... 187 1e-47 >PA4923 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Pae Pseudomonas aeruginosa Length = 195 Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 103/190 (54%), Positives = 134/190 (70%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAREMVNNNIALVYGGGNVGLMGIIASEVMQLGGEA 60 ++S+CV+CG+SPGASP Y EAA L R + + LVYGGG VGLMG +A + GGE Sbjct: 3 LRSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEV 62 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 G+IP++L + E+GH GLTRL +V MH RKA MAEL+D F+A+PGG+GTLEELFEV TW Sbjct: 63 IGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTW 122 Query: 121 AQLGFHYKPICLYNVNGFYDNLIAFVDHLVSQRFVSSDQSGLMMHEADPARLIQRFQTFT 180 QLG+H KP+ L VNGFYD L+ F+DHLV +RFV ++ G++ A P L+ +T Sbjct: 123 GQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWT 182 Query: 181 PTYKTKWADR 190 P+ KW DR Sbjct: 183 PSVAPKWVDR 192 >RSc2087 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Rso Ralstonia solanacearum Length = 194 Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 105/191 (54%), Positives = 129/191 (67%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAREMVNNNIALVYGGGNVGLMGIIASEVMQLGGEA 60 MKSICVYCGSSPG P Y A L EMV + LVYGGGN+GLMGI+A V++ G Sbjct: 1 MKSICVYCGSSPGERPEYKAGAIALGNEMVGRGLTLVYGGGNIGLMGIVADAVLRGGNPV 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 G+IPK+L+ KE+GH +T LHIV MH+RK MMA+ +D F+AMPGG+GT EELFE TW Sbjct: 61 IGIIPKSLVRKEVGHKDVTELHIVDSMHQRKQMMADRADAFIAMPGGIGTYEELFETFTW 120 Query: 121 AQLGFHYKPICLYNVNGFYDNLIAFVDHLVSQRFVSSDQSGLMMHEADPARLIQRFQTFT 180 QLG+H KPI L NV GFYD L+AF+DH V + F+ + L+ ADPA LI R + Sbjct: 121 LQLGYHGKPIGLLNVAGFYDKLLAFIDHAVEEGFLKRHHADLLHVSADPAELIDRLERAP 180 Query: 181 PTYKTKWADRE 191 KWA+R Sbjct: 181 RHPVDKWAERR 191 >Cgl2328 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Cgl Corynebacterium glutamicum Length = 195 Score = 194 bits (494), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 94/187 (50%), Positives = 128/187 (68%), Gaps = 1/187 (0%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAREMVNNNIALVYGGGNVGLMGIIASEVMQLGGEA 60 ++ + V+ GS+ G+S Y +AA+ LA+ V+ I LVYGGG VGLMGI+A ++ GGEA Sbjct: 10 LQRVTVFTGSALGSSSLYTQAAQTLAKTAVDRGIDLVYGGGKVGLMGIVADAFLESGGEA 69 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 GVI ++L+ ELGH+ LT L IV DMH RK MAEL DGF+AMPGG GTLEELFEV TW Sbjct: 70 FGVITESLMKGELGHEKLTELEIVPDMHIRKRRMAELGDGFIAMPGGAGTLEELFEVWTW 129 Query: 121 AQLGFHYKPICLYNVNGFYDNLIAFVDHLVSQRFVSSDQSGLMMHEADPARLIQRFQTFT 180 QLG H KP+ LY+V+GF+ L+ ++ + + F+ D ++ E+DP L++ QT+T Sbjct: 130 QQLGIHQKPVALYDVDGFWQPLLEMLEQMTQRGFIKRDFFECLIVESDPHALLKAMQTWT 189 Query: 181 PTYKTKW 187 P KW Sbjct: 190 PP-APKW 195 >BH3084 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Bha Bacillus halodurans Length = 187 Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 85/178 (47%), Positives = 121/178 (67%) Query: 4 ICVYCGSSPGASPAYAEAARKLAREMVNNNIALVYGGGNVGLMGIIASEVMQLGGEATGV 63 I V+CGSS GAS Y E AR+L +E+ I LVYGG +VG+MG +A V++ GGE GV Sbjct: 3 IAVFCGSSNGASDVYKEGARQLGKELARRGITLVYGGASVGIMGAVADSVLEAGGEVIGV 62 Query: 64 IPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTWAQL 123 +P+ L + E+ H LT+L +V+ MHERKA MAEL+DGF+A+PGG GTLEE FE+ TWAQ+ Sbjct: 63 MPRFLEEPEISHPHLTKLIVVETMHERKAKMAELADGFLALPGGPGTLEEFFEIFTWAQI 122 Query: 124 GFHYKPICLYNVNGFYDNLIAFVDHLVSQRFVSSDQSGLMMHEADPARLIQRFQTFTP 181 G H KP L N+N ++D L+ + H+ +++F+ + + DP L+ +F T+ P Sbjct: 123 GLHQKPCGLLNINHYFDPLVTLLHHMSNEQFLHEKYRSMALVHTDPILLLDQFSTYEP 180 >BS_yvdD [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Bsu Bacillus subtilis Length = 191 Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 121/190 (63%), Gaps = 1/190 (0%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAREMVNNNIALVYGGGNVGLMGIIASEVMQLGGEA 60 MK+ICV+ GS+PG + AY A +L M I LVYGG VGLMG IA +M+ GG A Sbjct: 1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTA 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 GV+P L E+ H LT L V MHERKA M+EL+DGF++MPGG GT EELFEVL W Sbjct: 61 IGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCW 120 Query: 121 AQLGFHYKPICLYNVNGFYDNLIAFVDHLVSQRFVSSDQSGLMMHEADPARLIQRFQTFT 180 AQ+G H KPI LYNVNG+++ ++ V + + + F + L+ + P LI++ Q ++ Sbjct: 121 AQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNYS 180 Query: 181 -PTYKTKWAD 189 P + KW + Sbjct: 181 YPILEKKWTE 190