BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0094.p         (261 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl2931 [ET] COG0834 ABC-type amino acid transport/signal transd...    67   5e-11

>AGl2931 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 365

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 91  DVVLTRVDPARSNVADATLIPTGYS-AGGMAIMRSDTTIRKWDDLKGRTVCVSSGSPYVG 149
           D+++  +            +PT Y   GG AI R D+ I+ W DLKG+  CVS GS Y  
Sbjct: 187 DILIANMQYTEERAKTLDYVPTPYDRQGGAAIGRKDSGIKDWSDLKGKIACVSQGSNYTQ 246

Query: 150 TLSARYGAIEKVMPAPADSLLAVRIGQC 177
            L  +YGA  K +P+  +SLLA++ G C
Sbjct: 247 PLIEQYGAQVKALPSQPESLLALKGGNC 274