BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0073.p (453 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 487 e-137 PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae... 350 3e-96 RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso ... 300 4e-81 PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 268 3e-71 PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 233 9e-61 >PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 439 Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/404 (57%), Positives = 295/404 (73%), Gaps = 16/404 (3%) Query: 36 LVQRGEYLAKAGDCVACHTAKGGKPFAGGLAIATPIGTVYSSNITPDKENGIGNYSEEDF 95 LV++GEYLA+AGDCVACHTA+ GKPFAGGL + TPIG VYS+NITPD++ GIG+YS EDF Sbjct: 27 LVRQGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITPDRKTGIGDYSFEDF 86 Query: 96 DRALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMHGVQADPAPNRGVDITWPLS 155 DRA+RHG+ + G +LYPAMPYPSYA+V AD++ALYAYFMHGV+ PN+ DI WPLS Sbjct: 87 DRAVRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWPLS 146 Query: 156 MRWPLSIWRKVFAPAVA-VDGPEDNSP-LVRGQYLVEGLGHCGACHTPCRRRRCPMTAAS 213 MRWPL+ WR FAP V P L RG YLVEGLGHCGACHTP Sbjct: 147 MRWPLAFWRWTFAPEVKDFQAAAGQDPVLARGAYLVEGLGHCGACHTP------------ 194 Query: 214 SGVGMQEKALS-NDSSQFLSGGV-IDGYLANNLRGDARDGLGNWSEADIVAFLKTGRNSH 271 G+GMQEKAL+ +D + +LSG ++ ++A +LRGD R GLG+WSEAD+V+FL+TGR+ Sbjct: 195 RGLGMQEKALAASDGAAYLSGSAPLENWIAKSLRGDHRTGLGSWSEADLVSFLRTGRSER 254 Query: 272 SAAFGGMADVVANSTQYMTEEDLSAMAKYLKSLKPVKDGTPALAYDDKTHQALRKGSDQS 331 SA FGGM+DVV +S QYMT+ DL+A+A+YLKSL P YD+ QAL G D Sbjct: 255 SAVFGGMSDVVVHSMQYMTDADLTAIARYLKSLPPADPADQPHVYDESVAQALFHGDDSK 314 Query: 332 PGAMAFLNNCAACHRSSGKGYDETFPSLALSPTVNAENPASLIRIVLEGAEMPWTHKAPT 391 GA +++NC ACHR+ GKGY FP+LA +P V +P SL+ IVL+G +P TH+AP+ Sbjct: 315 TGAALYVDNCGACHRTDGKGYARVFPALAGNPVVTGSDPTSLVHIVLKGGTLPATHQAPS 374 Query: 392 QFAMPAFGSRLSDQEVAEVVTFIRSSWGNQASSVSASDVAKVRK 435 F MP FG R++DQE+A+VV FIR+SWGNQA SVS +V ++RK Sbjct: 375 SFTMPPFGWRMNDQEIADVVNFIRTSWGNQAPSVSVDEVRRLRK 418 >PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 441 Score = 350 bits (899), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 185/424 (43%), Positives = 254/424 (59%), Gaps = 32/424 (7%) Query: 30 PSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLAIATPIGTVYSSNITPDKENGIGN 89 P+ D L+++G Y+A+ GDC+ACHT G P AGGL + TP+GT+YS+NITPD+E GIG Sbjct: 26 PTTDAALIEKGRYVAQLGDCIACHTGPQGAPMAGGLELKTPMGTIYSTNITPDRETGIGR 85 Query: 90 YSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMHGVQADPAPNRGVD 149 YS E+FDRA+R G+ +G +LYPAMPYPSYAK+ D++ALYAY MHGVQ N Sbjct: 86 YSFEEFDRAMRKGVTAEGVNLYPAMPYPSYAKISEEDMRALYAYLMHGVQPVTQANTPSA 145 Query: 150 ITWPLSMRWPLSIWRKVFAPAVAVDGPEDNSPLV-RGQYLVEGLGHCGACHTPCRRRRCP 208 ++WP + RW LS+W F D P++ RG YLV+GLGHCGACHTP Sbjct: 146 MSWPFNQRWGLSLWNWAFLDDAPFTPSSDADPVINRGAYLVQGLGHCGACHTP------- 198 Query: 209 MTAASSGVGMQEKALSN--DSSQF-LSGGVIDGYLANNLRGDARDGLGNWSEADIVAFLK 265 G+ QEKA+S S QF L+G ++ + A +LR W+ D V LK Sbjct: 199 -----RGIAFQEKAMSEAGRSGQFYLAGETVEQWQALSLR-------NLWTVEDTVQLLK 246 Query: 266 TGRNSHSAAFGGMADVVANSTQYMTEEDLSAMAKYLKSLKPVKDGTPALAYDDKTHQALR 325 TG+N + G M DV+ +STQ+ +++DL A+A YLKSL KD P D + A Sbjct: 247 TGQNRFATVSGSMTDVIHHSTQHFSDDDLLAIASYLKSLPAGKDDLPMP--DSERPLAAP 304 Query: 326 KGSDQSPGAMAFLNNCAACHRSSGKGYDETFPSLALSPTVNAENPASLIRIVLEGAEMPW 385 S G + + C+ CHR G G FP LA +PTV + NP++L+ I L G + Sbjct: 305 VDLYSSRGGLGYAQFCSDCHRKDGSGVPGMFPPLAGNPTVASANPSTLLHITLTGWKTAQ 364 Query: 386 THKAPTQFAMPAFGSRLSDQEVAEVVTFIRSSWGNQASSVSASDVAKVRKQLPEKKTVEA 445 T + MP F ++L D+E+AE+++F+RSSWGNQ SS+ A V K+R++ +EA Sbjct: 365 TATHSRVYTMPGF-AQLEDREIAEILSFVRSSWGNQGSSIDAGQVKKLRQR------IEA 417 Query: 446 GSAP 449 G+ P Sbjct: 418 GNGP 421 >RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia solanacearum Length = 429 Score = 300 bits (768), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 182/442 (41%), Positives = 249/442 (56%), Gaps = 34/442 (7%) Query: 8 AACAAVMSLSALTAAAQSNPAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLAI 67 A A+ + LS L AAA + A AD ++RGEYLA AGDCVACHTA GGKPFAGGL + Sbjct: 4 AKAASFLLLSVLGAAAAARDADAPADAAQIKRGEYLAIAGDCVACHTAPGGKPFAGGLPL 63 Query: 68 ATP-IGTVYSSNITPDKENGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPAD 126 P +GT+YSSNITPD + GIG + EDF+RA+R G+ DG +LYPAMPYPSYAK+ AD Sbjct: 64 QIPMLGTIYSSNITPDPKTGIGKWRYEDFERAVRQGVSDDGENLYPAMPYPSYAKINDAD 123 Query: 127 VKALYAYFMHGVQA-DPAPNRGVDITWPLSMRWPLSIWRKVFAPAVAVDGPEDNSPLV-R 184 ++ LYAYF +GV A AP G I WPL+MRWPL +W F D +P R Sbjct: 124 MRDLYAYFRYGVAAVQYAPPPGT-IRWPLNMRWPLKLWNLAFLKRAPYLPKGDMTPTWNR 182 Query: 185 GQYLVEGLGHCGACHTPCRRRRCPMTAASSGVGMQEKALSNDSSQFLSGGVIDGYLANNL 244 G YL +GL HCG CHTP G MQEKA+ +L+G + G+ A N+ Sbjct: 183 GAYLAQGLAHCGTCHTP------------RGFAMQEKAMDERGKGYLAGSTLAGWSAYNI 230 Query: 245 RGDARDGLGNWSEADIVAFLKTGR-NSHSAAFGGMADVVANSTQYMTEEDLSAMAKYLKS 303 D G+G W IV +L+TG A G M + V +S MTE D+ A+A+YL++ Sbjct: 231 TSDPVSGIGGWKPEQIVQYLRTGSVPGIGQAAGPMGEAVQHSFSRMTERDVRAIAEYLRT 290 Query: 304 LKPVKD---------GTPALAYDDKTHQALRKGSDQSPGAMAFLNNCAACHRSSGKGY-D 353 + V GTPA + + D A +L NCA CH++ G+G D Sbjct: 291 VPAVSTGAQRARHGWGTPATDVIALRGKPIETTID---AARLYLGNCATCHQADGRGTPD 347 Query: 354 ETFPSLALSPTVNAENPASLIRIVLEGAEMPWTHKAPTQFAMPAFGSRLSDQEVAEVVTF 413 +P L + V A + +L++++L G E MPAFG +LSD ++A + + Sbjct: 348 GYYPPLLHNSAVGARDTRNLVQVMLHGIE---RRAGDRHIGMPAFGRQLSDAQLAALANY 404 Query: 414 IRSSWGNQAS-SVSASDVAKVR 434 + +G+ A+ +++A ++AK R Sbjct: 405 VTRQFGDPATPALTADEIAKRR 426 >PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 415 Score = 268 bits (684), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 159/419 (37%), Positives = 237/419 (56%), Gaps = 44/419 (10%) Query: 36 LVQRGEYLAKAGDCVACHTAKGGKPFAGGLAIATPIGTVYSSNITPDKENGIGNYSEEDF 95 LV+RGEYLA+A DC+ACHTA+GG PFAGGL I +P GT+Y +NITPDKE+GIG YS ++F Sbjct: 29 LVKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNITPDKEHGIGAYSADEF 88 Query: 96 DRALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFM-HGVQADPAPNRGVDITWPL 154 AL G RKDGA LYPAMPY SY ++ D A+YAY M A PAP +++P Sbjct: 89 FAALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYLMAQEPIARPAPQ--TSLSFPF 146 Query: 155 SMRWPLSIWRKVFAPAVAVDGPEDNSP-LVRGQYLVEGLGHCGACHTPCRRRRCPMTAAS 213 ++R L+ W ++ +V + E S RGQY+VE LGHCG CHTP Sbjct: 147 NVRMGLAGWNLLYGKSVRLQPEEGRSEAWKRGQYMVEVLGHCGECHTP------------ 194 Query: 214 SGVGMQEKALSNDSSQFLSGGVIDGYLANNLR-GD--ARDGLGNWSEADIVAFLKTGRNS 270 + A + + + LSGG+++GYLA +L GD AR W++ D+ +FLK G ++ Sbjct: 195 -----RNLAGALEQDKRLSGGLLNGYLAPSLLPGDLAAR----GWTQPDLASFLKHGMSA 245 Query: 271 HSAAFGGMADVVANSTQYMTEEDLSAMAKYLKSLKP----VKDGTPALAYDDKTHQALRK 326 + F M VV +STQ++ + DL+AMA YL +P V P +D ++ Sbjct: 246 QGSMFNEMFPVVHHSTQHLDDGDLAAMATYLLGDQPPPAKVVQALPEAQLNDSG----KR 301 Query: 327 GSDQSPGAMAFLNNCAACHRSSGKGYDETFPSLALSPTVNAENPASLIRIVLEG-AEMPW 385 G Q +LN CA CH G+G ++ + T+ ++P +L+R++ +G E + Sbjct: 302 GRQQ------YLNVCAGCHGGEGEGKPHIAVAMNGNTTLRLQDPRNLLRVIEDGIVEQQF 355 Query: 386 THKAPTQFAMPAFGSRLSDQEVAEVVTFIRSSWGNQASSVSASDVAKVRKQLPEKKTVE 444 T Q MP F +L D+++ +++ ++R +WG + VA+++ + TV+ Sbjct: 356 TGFERMQ-PMPGFAGKLDDEQLTDLLNYLRQTWGGLPGDLGPQQVAQLKMESASAHTVK 413 >PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 433 Score = 233 bits (593), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 162/442 (36%), Positives = 226/442 (51%), Gaps = 41/442 (9%) Query: 7 IAACAAVMSLSALTAAAQSNPAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLA 66 +AA A + A + P SA+Q + RGE LA GDC CHT +GG AGG A Sbjct: 18 LAAIALGYAWQPAIAPLEGTPGPFSAEQ--IARGERLAALGDCAVCHTREGGPRNAGGRA 75 Query: 67 IATPIGTVYSSNITPDKENGIGNYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPAD 126 + TP GT+YSSN+TPD+ +GIG +S F+RA+RHG+ +DG+ LYPA PY ++ + + D Sbjct: 76 LPTPFGTIYSSNLTPDRASGIGGWSYPAFERAMRHGVARDGSYLYPAFPYTAFTRTRDED 135 Query: 127 VKALYAYFMH--GVQADPAPNRGVDITWPLSMRWPLSIWRKVFA-PAVAVDGPEDNSPLV 183 +KALYAY M V ++ N+ + +P R ++ W +F P D P N Sbjct: 136 LKALYAYLMSQPAVHSETPANQ---LPFPFDQRQLMAGWNLLFLDPGAYRDEPTRNQQWN 192 Query: 184 RGQYLVEGLGHCGACHTPCRRRRCPMTAASSGVGMQEKALSNDSSQFLSGGVIDGYLANN 243 RG YL EGLGHC ACH+P R + A SG S +GG +G+ A Sbjct: 193 RGAYLAEGLGHCSACHSP----RNALGAEKSG------------SAHFAGGEAEGWTAPA 236 Query: 244 LRGDARDGLGNWSEADIVAFLKTGRNS-HSAAFGGMADVVANSTQYMTEEDLSAMAKYLK 302 L + + WSE + A+L+ G ++ H A G MA VV +EDL A+A YL Sbjct: 237 LNASSPAPIA-WSEEALYAYLRHGYSAYHGVASGPMAPVVGEGLAKQPDEDLRALAHYLA 295 Query: 303 SLKPVKDGTPALAYDDKTHQALRK---GSDQSP---GAMAFLNNCAACHR-SSGKGYDET 355 S PA D + Q L + G Q P GA F C ACH G + Sbjct: 296 SYA----AAPAGETDQQQAQRLDRQGYGRVQPPSGSGARLFAGACLACHHDGDGPRFFGV 351 Query: 356 FPSLALSPTVNAENPASLIRIVLEGAEMPWTHKAPTQFAMPAFGSRLSDQEVAEVVTFIR 415 PSLAL+ V+A++P +L+RI+L+G P T MP F L D++VA + ++R Sbjct: 352 RPSLALNSNVHADSPDNLLRIILDGIHSPATGDLGY---MPGFRHSLDDRQVATLANYLR 408 Query: 416 SSW-GNQASSVSASDVAKVRKQ 436 + G A A+ A +R+Q Sbjct: 409 ERFAGKPAWPDLAAKAASLRRQ 430