BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0067.p         (200 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0643 [S] COG4269 Predicted membrane protein Rso Ralstonia sol...   151   8e-37
SMc00782 Non COG                                                      125   7e-29
YPO0399 [S] COG4269 Predicted membrane protein Ype Yersinia pestis    124   2e-28
AGc349 [S] COG4269 Predicted membrane protein Atu Agrobacterium ...   119   5e-27
DR2088 [S] COG4269 Predicted membrane protein Dra Deinococcus ra...   113   3e-25

>RSc0643 [S] COG4269 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 358

 Score =  151 bits (382), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 76/127 (59%), Positives = 92/127 (72%)

Query: 26  KPEAFSFSGRGGEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGN 85
           +P    F G G EYFRIWIVNLLL+IVTLGIYSAWAKVR L+YFY NT + G SFDYHG+
Sbjct: 20  QPLRVRFCGSGSEYFRIWIVNLLLTIVTLGIYSAWAKVRTLQYFYRNTQLGGASFDYHGS 79

Query: 86  PIAILKGRIIAVVLLGVYHLAGAGGPLLGLVAALLLVLAGPWLLWRSLQFKLYNTSYRGI 145
           P AILKGR I  VL   ++L+G   P+L L+    + L  PWLL RSL+F++ N+SYRG+
Sbjct: 80  PTAILKGRAIIFVLALAFNLSGQVSPVLTLLLLAAIGLVFPWLLVRSLRFRMANSSYRGL 139

Query: 146 RFGFRGS 152
           RF F G 
Sbjct: 140 RFAFTGK 146


>SMc00782 Non COG
          Length = 370

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 2/155 (1%)

Query: 5   SDLPSQATPPFSTVLNTAAPVKPEAFSFSGRGGEYFRIWIVNLLLSIVTLGIYSAWAKVR 64
             LP+Q     S     AA    +  SF+G G EYF IWIVN+LL+I+TLGIYSAWAKVR
Sbjct: 3   ESLPAQNAGERS--FGRAAEGDIQRLSFTGSGSEYFGIWIVNILLTIITLGIYSAWAKVR 60

Query: 65  RLRYFYDNTSVAGGSFDYHGNPIAILKGRIIAVVLLGVYHLAGAGGPLLGLVAALLLVLA 124
           R RYFY NT + G  F+YH +   IL GR+I    L +Y++     PL+G+   +L++  
Sbjct: 61  RNRYFYGNTILLGRGFEYHASGGQILIGRLIVFAYLVLYNIMLTFVPLVGIGLGVLMLFF 120

Query: 125 GPWLLWRSLQFKLYNTSYRGIRFGFRGSLGGXQLS 159
            PWL+ R L+F    TSYR +RF F G  GG  L+
Sbjct: 121 VPWLVARGLRFSARVTSYRNVRFDFVGGAGGAFLA 155


>YPO0399 [S] COG4269 Predicted membrane protein Ype Yersinia pestis
          Length = 398

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 87/124 (70%)

Query: 31  SFSGRGGEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAIL 90
           +F G GGEYF IW+VNLLL+I+TLG+YSAWA VRR RYFY NT + G  FDYH  PI IL
Sbjct: 15  AFKGEGGEYFSIWLVNLLLTIITLGVYSAWATVRRRRYFYGNTELNGDRFDYHAEPIEIL 74

Query: 91  KGRIIAVVLLGVYHLAGAGGPLLGLVAALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFR 150
           KGR++ +  + ++++  A  P LGL+ AL+L+   PW++ RS ++    TSYRG+RF + 
Sbjct: 75  KGRLMVIGGVILFYILLAIAPTLGLLVALVLLALIPWIIIRSWRYNAIMTSYRGVRFNYH 134

Query: 151 GSLG 154
              G
Sbjct: 135 CQTG 138


>AGc349 [S] COG4269 Predicted membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 367

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 82/129 (63%)

Query: 31  SFSGRGGEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAIL 90
           SF+G   EYF IWIVN+LL+I+TLGIYSAWAKVRR RYF  NT +AG +F YH     I 
Sbjct: 17  SFNGNAKEYFGIWIVNILLTIMTLGIYSAWAKVRRKRYFNGNTLLAGRAFGYHATGGQIF 76

Query: 91  KGRIIAVVLLGVYHLAGAGGPLLGLVAALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFR 150
           KGR+IA   +    L G   P L     +LL++  PW++ RS++F    TSYR +RF F 
Sbjct: 77  KGRLIAFAFIVFSQLVGLIHPFLVFAPTILLLIFLPWVITRSIRFNARVTSYRNVRFDFV 136

Query: 151 GSLGGXQLS 159
           G+  G  +S
Sbjct: 137 GTAWGAFVS 145


>DR2088 [S] COG4269 Predicted membrane protein Dra Deinococcus radiodurans
          Length = 388

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 13/170 (7%)

Query: 3   EPSDLPSQATPPFSTVLNT---------AAPVKPEAFSFSGRGGEYFRIWIVNLLLSIVT 53
           E   LP Q  PP   +L T         AA V      F+G+  EYFR+WIVNL L+++T
Sbjct: 2   EAMTLPPQDLPPGQALLATPLGTANAPQAARVHTYPLRFTGQASEYFRVWIVNLALTVIT 61

Query: 54  LGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAILKGRIIAVVLLGVY----HLAGAG 109
           LG+Y+ WA++R  +Y Y +T +   +F+Y  +P A+L+G +I V   G+Y     L   G
Sbjct: 62  LGLYTPWARIRTRQYLYGHTWLDDQNFEYTASPFALLRGYLIVVAFFGLYTAAQQLQFTG 121

Query: 110 GPLLGLVAALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFRGSLGGXQLS 159
              +     LL  +A PWL+ +S++F+  +T +RG+RF F GSLG   +S
Sbjct: 122 WEWVTGALGLLFAVAYPWLVRQSMRFQARSTVHRGLRFRFTGSLGDAYVS 171