BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0056.p (445 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0332 [T] COG2204 Response regulator containing CheY-like rece... 471 e-132 AGl3046 [T] COG2204 Response regulator containing CheY-like rece... 468 e-131 RSp0009 [T] COG2204 Response regulator containing CheY-like rece... 466 e-131 SMb20613 [T] COG2204 Response regulator containing CheY-like rec... 462 e-130 PA1335 [T] COG2204 Response regulator containing CheY-like recei... 449 e-126 >RSc0332 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 438 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 256/435 (58%), Positives = 307/435 (70%), Gaps = 3/435 (0%) Query: 9 SALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLD 68 + L IED+ VR+ATAQ+LEL GF V A ASAEEA+ I DF GVVVSD+RLPG SGLD Sbjct: 6 NVLFIEDDPPVRQATAQSLELAGFQVQAYASAEEAVGRIDADFYGVVVSDLRLPGASGLD 65 Query: 69 VLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNL 128 VLA + +PV++VTGHGD+ MAV+AMR GA+DF+EKPF ++ L E RA E+R L Sbjct: 66 VLAHCQSFGTGIPVVLVTGHGDITMAVQAMRDGAFDFIEKPFPAERLTETVRRAVERRAL 125 Query: 129 VLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQ 188 LENR LR A ++G+S A+ VR LI ++ D VLING+TGTGKE+VAR Sbjct: 126 ELENRALRRELAGPAAGTRIIGRSQAMASVRALIDNVAATDAPVLINGETGTGKELVARS 185 Query: 189 LHAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDE 247 LH S R PF+ALNCGA+PE +FESE+FGHE GAFTGA KRRIGK+E+A+GGTLFLDE Sbjct: 186 LHTLSPRHDKPFIALNCGAVPEQIFESEMFGHEAGAFTGAGKRRIGKIEHASGGTLFLDE 245 Query: 248 IESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYR 307 IESMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L G FR DLYYR Sbjct: 246 IESMPLALQVKLLRVLQEGMLERLGSNASVRIDVRIVAAAKGDMEALIEAGGFRRDLYYR 305 Query: 308 IGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVREL 367 + VVAIDLP L +RREDI L HF AAVRY+R P S Q + Q +WPGNVREL Sbjct: 306 LNVVAIDLPPLRERREDIIPLFEHFLLEAAVRYQRPLPMLSERQRHELMQSNWPGNVREL 365 Query: 368 RNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLG 427 RN ADR VLGV + VS A L E+VE++E +IA L + GSV AA+ L Sbjct: 366 RNAADRLVLGVGR--TPVVSDAAEDGMPLKERVERYERTVIAETLARTGGSVHQAADILQ 423 Query: 428 IPKKTLYDKIRKYQL 442 + + TLYDKI++Y L Sbjct: 424 VGRATLYDKIKRYGL 438 >AGl3046 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 454 Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/436 (53%), Positives = 312/436 (71%), Gaps = 4/436 (0%) Query: 9 SALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLD 68 + L++D+ +R+A Q LEL G VT+ + AE+AL + DF G++++DVR+PG++GL+ Sbjct: 6 TIFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALNEDFDGIIITDVRMPGMTGLE 65 Query: 69 VLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNL 128 V ID DLPVI++TGHGDV MAV+A+ GAYDF+ KPF ++ ++E A RA EKR L Sbjct: 66 FFDHVRKIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRALEKRRL 125 Query: 129 VLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQ 188 VLENR LR A + PL+GQ+PA+ER+RT +R + DVDVL+ G+TG+GKEVVA Sbjct: 126 VLENRALRRAAGQAEDDLPLIGQTPAMERLRTTLRHIADTDVDVLVAGETGSGKEVVATA 185 Query: 189 LHAASGR--KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLD 246 LH S + KG FVALNCGALPETV ESE+FGHEPGAFTGAQK+R+G++E+++GGTLFLD Sbjct: 186 LHRWSKKRSKGNFVALNCGALPETVIESELFGHEPGAFTGAQKKRVGRIEHSSGGTLFLD 245 Query: 247 EIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYY 306 EIESMPLA+QVK+LRVL+ R + LG NE +D RVVAA+K DL A G FREDLYY Sbjct: 246 EIESMPLAVQVKMLRVLEMREVSPLGSNEERPVDIRVVAAAKVDLGDPAERGTFREDLYY 305 Query: 307 RIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRE 366 R+ VV + +P L +R+ DI LL +HF AA R+ P SA ++ Q DWPGNVRE Sbjct: 306 RLNVVTLSIPPLRERKADIPLLFSHFVTKAANRFNMPVPQISAGTSRRLQDHDWPGNVRE 365 Query: 367 LRNFADRWVLGVEQMAASAVS--SAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAE 424 L +FA+R VLG+E A+A + SA+P +LPE++++ EA +I L+ S G VA Sbjct: 366 LGHFAERVVLGLEAEPAAAPTSQSAIPASGTLPERMDEIEAHIIRETLERSNGDVAETIA 425 Query: 425 RLGIPKKTLYDKIRKY 440 LGI +KT YDK++++ Sbjct: 426 TLGIARKTFYDKLQRH 441 >RSp0009 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 454 Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust. Identities = 250/434 (57%), Positives = 302/434 (69%), Gaps = 7/434 (1%) Query: 8 ASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGL 67 A LIED+ VR QAL L V A AE AL + VVVSDVRLPG GL Sbjct: 17 APVFLIEDDDVVRLGCEQALTLADLPVRPFADAESALAALAAQTPSVVVSDVRLPGRDGL 76 Query: 68 DVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRN 127 VL ++ D LPVI+VTGHGDV MAV AMRAGAYDF+EKPF S+ L+++ RA EKR Sbjct: 77 AVLREMLRHDRQLPVILVTGHGDVSMAVTAMRAGAYDFIEKPFHSERLVDVVRRALEKRR 136 Query: 128 LVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVAR 187 L EN RLR A + LVGQS ++ VR L+ +L P D D+L+ G+TG GK+V+AR Sbjct: 137 LTAENLRLRAAL-QGRQAFALVGQSQTMQDVRRLVAALAPTDADILVTGETGAGKDVLAR 195 Query: 188 QLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDE 247 +H S R+GPFVALNC ALPE+VFESE+FGHE GAFTGA +RRIGK+EYA+GGTLFLDE Sbjct: 196 AIHEGSRRRGPFVALNCAALPESVFESEMFGHEAGAFTGANRRRIGKMEYADGGTLFLDE 255 Query: 248 IESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYR 307 IESMPLALQ KLLR LQER +ERLG N SV +DCRVVAA+K DL A G FR DLYYR Sbjct: 256 IESMPLALQAKLLRALQERSIERLGSNASVPVDCRVVAAAKVDLKAAADHGAFRADLYYR 315 Query: 308 IGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVREL 367 + VV+I LP L QR EDI LL+AHF Q AA+RY R +P WSA M +WQ DWPGNVREL Sbjct: 316 LNVVSIALPPLRQRAEDIPLLMAHFLQQAALRYDRAAPDWSAQDMMRWQHHDWPGNVREL 375 Query: 368 RNFADRWVLGVEQ-MAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERL 426 +N A+R+ LG++ + AS S SL ++ E I AL+ +EGSVA AA+ L Sbjct: 376 KNVAERFCLGLDDGLIASEASQ-----HSLAGRMMAVERATIEEALRATEGSVARAADLL 430 Query: 427 GIPKKTLYDKIRKY 440 +P+KTLYDK+ ++ Sbjct: 431 AVPRKTLYDKLNRH 444 >SMb20613 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Sme Sinorhizobium meliloti Length = 460 Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/435 (53%), Positives = 314/435 (72%), Gaps = 1/435 (0%) Query: 7 AASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSG 66 A S LI+D++ +R+A Q LEL GF V++ ASA EAL ++ DFAG+V+SD+R+PG+ G Sbjct: 4 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDG 63 Query: 67 LDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKR 126 L + +++A+D DLP+I+VTGHGD+ MAV+A++ GAYDF+ KPF++D L++ A RA+EKR Sbjct: 64 LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 123 Query: 127 NLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVA 186 LV+ENR LR A E PL+GQ+P +ER+R ++ + DVDVL+ G+TG+GKEVVA Sbjct: 124 RLVMENRSLRRAAEAASEGLPLIGQTPVMERLRQTLKHIADTDVDVLVAGETGSGKEVVA 183 Query: 187 RQLHAASGRK-GPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFL 245 LH S R+ G FVALNCGALPETV ESE+FGHEPGAFTGA K+RIG++E+A+GGTLFL Sbjct: 184 TLLHQWSRRRTGNFVALNCGALPETVIESELFGHEPGAFTGAVKKRIGRIEHASGGTLFL 243 Query: 246 DEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLY 305 DEIE+MP A QVK+LRVL+ R + LG N + +D RVVAA+K DL AA G FREDLY Sbjct: 244 DEIEAMPPATQVKMLRVLEAREITPLGTNLTRPVDIRVVAAAKVDLGDPAARGDFREDLY 303 Query: 306 YRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVR 365 YR+ VV + +P L +RR+DI LL +HF A+ R+ RE PA SAA WPGNVR Sbjct: 304 YRLNVVTLSIPPLRERRDDIPLLFSHFLARASERFGREVPAISAAMRAYLATHSWPGNVR 363 Query: 366 ELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAER 425 EL +FA+R LGVE ++ ++LPE++E++EA ++ AL G V + Sbjct: 364 ELSHFAERVALGVEGNLGVPAAAPASSGATLPERLERYEADILKQALTAHCGDVKETLQA 423 Query: 426 LGIPKKTLYDKIRKY 440 LGIP+KT YDK++++ Sbjct: 424 LGIPRKTFYDKLQRH 438 >PA1335 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Pae Pseudomonas aeruginosa Length = 425 Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/422 (55%), Positives = 297/422 (70%), Gaps = 7/422 (1%) Query: 25 QALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVLARVVAIDHDLPVIV 84 QALEL SAEEAL + RDFAG+VVSD+RLPG+ GL +L R+ A+D LPV++ Sbjct: 6 QALELEDIPCIGVGSAEEALQRVDRDFAGIVVSDIRLPGIDGLTLLERLKALDPSLPVVL 65 Query: 85 VTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVLENRRLREAWAHDPE 144 +TGHGD+ MAV+AM AGAYDF+EKPFS + L+E+A RA E+R L E LR A + Sbjct: 66 ITGHGDISMAVQAMHAGAYDFMEKPFSPERLVEVARRALEQRGLAREVSALRRQLAGRQD 125 Query: 145 LPP-LVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLHAASGR-KGPFVAL 202 L ++G+SPAI+ +R LI ++G +VLI G+TGTGKE+VAR LH S R + FVAL Sbjct: 126 LAQRIIGRSPAIQALRELIANVGDTSANVLILGETGTGKELVARCLHDYSRRHQHAFVAL 185 Query: 203 NCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIESMPLALQVKLLRV 262 NCG LPE +F+SEIFGHE AFTGA KRRIGK+E+ANGGTLFLDEIESMP+ LQ+KLLRV Sbjct: 186 NCGGLPENLFDSEIFGHEAHAFTGANKRRIGKIEHANGGTLFLDEIESMPVNLQIKLLRV 245 Query: 263 LQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIGVVAIDLPALNQRR 322 LQE LERLG N+S+ +DCRV+AA+KADL + GQFR DLYYR+ VV+++LPAL RR Sbjct: 246 LQEHTLERLGSNQSIPVDCRVIAATKADLAAMGKSGQFRSDLYYRLNVVSLELPALRDRR 305 Query: 323 EDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRNFADRWVLG--VEQ 380 EDI LL HF Q +++R+ R +P A + DWPGNVRELRN A+R+ LG V Sbjct: 306 EDILLLFEHFLQQSSLRFDRPAPELDRATVASLMAHDWPGNVRELRNVAERFALGLPVFN 365 Query: 381 MAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGIPKKTLYDKIRKY 440 AV + P + E VE FE L+ AL G++ A++ LG+ K TL+DK++KY Sbjct: 366 KGGQAVQTGGPRFA---EAVEAFEKALLGDALARHHGNLTQASQDLGMAKTTLFDKVKKY 422 Query: 441 QL 442 L Sbjct: 423 GL 424