BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0051.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2768 [H] COG0611 Thiamine monophosphate kinase Rso Ralstonia ...   197   5e-51
YPO3180 [H] COG0611 Thiamine monophosphate kinase Ype Yersinia p...   159   2e-39
PA4051 [H] COG0611 Thiamine monophosphate kinase Pae Pseudomonas...   154   9e-38
STM0419 [H] COG0611 Thiamine monophosphate kinase Sty Salmonella...   152   2e-37
ZthiL [H] COG0611 Thiamine monophosphate kinase EcZ Escherichia ...   149   3e-36

>RSc2768 [H] COG0611 Thiamine monophosphate kinase Rso Ralstonia
           solanacearum
          Length = 332

 Score =  197 bits (502), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 117/148 (79%), Gaps = 3/148 (2%)

Query: 2   LSEFELIARYFSRPPAPDSRTALGVGDDCALMTPAPGMQLAISSDMLVCGRHFLPDADPF 61
           LSEF LI RYF+RP        LGVGDDCAL+ P PG +LAIS+DMLV GRHF  DA+P 
Sbjct: 14  LSEFGLIRRYFTRPA---RHATLGVGDDCALLGPRPGHELAISTDMLVAGRHFFADAEPR 70

Query: 62  TLGHKCLAVNLSDLAAMGAQPIAFTLALALPEARADWLEPFSRGMLALADAHGCELIGGD 121
            LGHK LAVNLSDLAAMGA+P AFTLA+ALP A   WL PF+ G+LALADA  CELIGGD
Sbjct: 71  ALGHKALAVNLSDLAAMGAEPRAFTLAMALPAADPAWLGPFADGLLALADAFHCELIGGD 130

Query: 122 TTKGPLTISITIFGEVPPQQALRRDAAR 149
           TT+GPLT+S+T+FG+VP   ALRRDAAR
Sbjct: 131 TTRGPLTLSLTVFGDVPADLALRRDAAR 158


>YPO3180 [H] COG0611 Thiamine monophosphate kinase Ype Yersinia pestis
          Length = 329

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 100/146 (68%)

Query: 4   EFELIARYFSRPPAPDSRTALGVGDDCALMTPAPGMQLAISSDMLVCGRHFLPDADPFTL 63
           EF+LIARYF R  +      LG+GDDCAL+T A    LAIS+D LV G HFLPD DP  L
Sbjct: 5   EFDLIARYFDRFRSNRRDVELGIGDDCALLTVAEKQLLAISTDTLVSGVHFLPDIDPADL 64

Query: 64  GHKCLAVNLSDLAAMGAQPIAFTLALALPEARADWLEPFSRGMLALADAHGCELIGGDTT 123
           G+K LAVNLSDL+AMGA P   +LAL LP    DWL+ FS  +    + +G +LIGGDTT
Sbjct: 65  GYKSLAVNLSDLSAMGADPAWLSLALTLPSVNEDWLQAFSDSLFDQLNYYGMQLIGGDTT 124

Query: 124 KGPLTISITIFGEVPPQQALRRDAAR 149
           +GPL++++TI G VP  +AL R  AR
Sbjct: 125 RGPLSLTLTIHGFVPEGRALARAGAR 150


>PA4051 [H] COG0611 Thiamine monophosphate kinase Pae Pseudomonas
           aeruginosa
          Length = 322

 Score =  154 bits (388), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 104/150 (69%), Gaps = 2/150 (1%)

Query: 2   LSEFELIARYFSRPPAPDSRTA--LGVGDDCALMTPAPGMQLAISSDMLVCGRHFLPDAD 59
           + EFELI R+F+            LG+GDDCAL+ P  G QLA+S+D LV G HF    D
Sbjct: 1   MGEFELIRRFFAAAACAAPAADVALGIGDDCALLAPPAGEQLAVSTDTLVEGVHFPAGCD 60

Query: 60  PFTLGHKCLAVNLSDLAAMGAQPIAFTLALALPEARADWLEPFSRGMLALADAHGCELIG 119
           PF L  + LAV+ SDLAAMGA P+AFTLAL LP+A A+WL+ F+RG+ A+A   G  L+G
Sbjct: 61  PFLLAQRALAVSASDLAAMGAAPLAFTLALTLPQADAEWLQGFARGLDAMARQCGLALVG 120

Query: 120 GDTTKGPLTISITIFGEVPPQQALRRDAAR 149
           GDTT+GPL++++T+FG VP  QAL R  AR
Sbjct: 121 GDTTRGPLSMTLTVFGRVPAGQALTRAGAR 150


>STM0419 [H] COG0611 Thiamine monophosphate kinase Sty Salmonella
           typhimurium LT2
          Length = 325

 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 96/146 (65%)

Query: 4   EFELIARYFSRPPAPDSRTALGVGDDCALMTPAPGMQLAISSDMLVCGRHFLPDADPFTL 63
           EF LIARYF R  +       G+GDDCAL+       LAIS+D LV G HFLPD DP  L
Sbjct: 5   EFSLIARYFDRVRSSRLDVETGIGDDCALLNIPEKQTLAISTDTLVAGNHFLPDIDPADL 64

Query: 64  GHKCLAVNLSDLAAMGAQPIAFTLALALPEARADWLEPFSRGMLALADAHGCELIGGDTT 123
            +K LAVNLSDLAAMGA P   TLAL LPE    WLE FS  + AL + +  +LIGGDTT
Sbjct: 65  AYKALAVNLSDLAAMGADPAWLTLALTLPEVDEPWLEAFSDSLFALLNYYDMQLIGGDTT 124

Query: 124 KGPLTISITIFGEVPPQQALRRDAAR 149
           +GPL++++ I G +P  +AL+R  A+
Sbjct: 125 RGPLSMTLGIHGYIPAGRALKRSGAK 150


>ZthiL [H] COG0611 Thiamine monophosphate kinase EcZ Escherichia coli
           O157:H7 EDL933
          Length = 325

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 95/146 (65%)

Query: 4   EFELIARYFSRPPAPDSRTALGVGDDCALMTPAPGMQLAISSDMLVCGRHFLPDADPFTL 63
           EF LIARYF R  +      LG+GDDCAL+       LAIS+D LV G HFLPD DP  L
Sbjct: 5   EFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAISTDTLVAGNHFLPDIDPADL 64

Query: 64  GHKCLAVNLSDLAAMGAQPIAFTLALALPEARADWLEPFSRGMLALADAHGCELIGGDTT 123
            +K LAVNLSDLAAMGA P   TLAL LP+    WLE FS  +  L + +  +LIGGDTT
Sbjct: 65  AYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLESFSDSLFDLLNYYDMQLIGGDTT 124

Query: 124 KGPLTISITIFGEVPPQQALRRDAAR 149
           +GPL++++ I G VP  +AL R  A+
Sbjct: 125 RGPLSMTLGIHGFVPMGRALTRSGAK 150