BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0050.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2768 [H] COG0611 Thiamine monophosphate kinase Rso Ralstonia ...    83   1e-16
NMB0385 [H] COG0611 Thiamine monophosphate kinase Nme Neisseria ...    67   7e-12
NMA2103 [H] COG0611 Thiamine monophosphate kinase NmA Neisseria ...    66   2e-11

>RSc2768 [H] COG0611 Thiamine monophosphate kinase Rso Ralstonia
           solanacearum
          Length = 332

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 55/88 (62%)

Query: 1   VDALPAGAALQQRDLHLRRRFTLSGGDDYELCFSAPVRQRDAVYKAAQAAGTAVTRIGSI 60
           VD +P  A L +     + +  L+GGDDYELCF+AP   R+AV  A Q AG  VTRIG I
Sbjct: 243 VDRVPRSATLAEEPPARQLQCMLAGGDDYELCFTAPAGLREAVLAAGQHAGVPVTRIGRI 302

Query: 61  DAAPGLRLLDASGEALQETPDSFDHFRS 88
           D  PGLRL+DA G+ +  +   FDHF S
Sbjct: 303 DTEPGLRLIDAHGKPVAFSQAGFDHFSS 330


>NMB0385 [H] COG0611 Thiamine monophosphate kinase Nme Neisseria
           meningitidis MC58
          Length = 318

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 2   DALPAGAALQQRDLHLRRR---FTLSGGDDYELCFSAPVRQRDAVYKAAQAAGTAVTRIG 58
           D+LP+ + L  +D+  R +   +TL+GGDDYEL F+AP   R  V+ AA+  G  VTRIG
Sbjct: 232 DSLPSLSVL--KDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVFDAAERCGVPVTRIG 289

Query: 59  SIDAAPGLRLLDASGEALQETPDSFDHF 86
            I+    L++LDA G  L+     FDHF
Sbjct: 290 KINGGCRLKVLDADGRELELHSLGFDHF 317


>NMA2103 [H] COG0611 Thiamine monophosphate kinase NmA Neisseria
           meningitidis Z2491
          Length = 318

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 2   DALPAGAALQQRDLHLRRR---FTLSGGDDYELCFSAPVRQRDAVYKAAQAAGTAVTRIG 58
           D+LP+ + L  +D+  R +   +TL+GGDDYEL F+AP   R  V  AA+  G  VTRIG
Sbjct: 232 DSLPSLSVL--KDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVLDAAERCGVPVTRIG 289

Query: 59  SIDAAPGLRLLDASGEALQETPDSFDHF 86
            I+    L++LDA G  L+     FDHF
Sbjct: 290 KINGGCRLKVLDADGRELELHSLGFDHF 317