BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0011.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3392 [TK] COG0745 Response regulators consisting of a CheY-li... 291 1e-78 mll7953 [TK] COG0745 Response regulators consisting of a CheY-li... 216 4e-56 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 198 6e-51 RSc1736 [TK] COG0745 Response regulators consisting of a CheY-li... 189 3e-48 SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l... 188 8e-48 >RSc3392 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/219 (65%), Positives = 173/219 (78%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDN LA WL + L+ +F VD A+DGE AD +L ++YDVVLLDL LP L G+ Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VL+RLR+R N VPVMILTA+G ID+KV CLGAGADDYLVKPFEIREL+ARI+VLVRR T Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P A E+ CG+L Y + +R FA+ G L LPAREH VLE+L+L+ G+TVSK AL+ GVF Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLR 219 L ++ S +AIE+YI RLRKKL+ S A I+TLRGLGYLLR Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLLR 219 >mll7953 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 223 Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 150/222 (67%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M+LLL+EDN +LA WL + L++ + VDI DGE + L ++ +V+LDL LP++ G Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLR LR R N VPV++LTA+ S+D +V+ L GADDYL KPF+I EL ARI+ +RR Sbjct: 61 EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 A + CG+LV+D+NTR F++ G LAL REH VLE L+++ G+TVSK AL ++ Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 + AIE+Y+ R+RKKL+ S I TLRGLGYLLR D Sbjct: 181 FETDADPSAIEIYVHRVRKKLEGSRVQIATLRGLGYLLRHED 222 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 107/218 (49%), Positives = 139/218 (63%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+ED+PQLA + Q LK + VD+ DG AD L E Y + +LD+ LP++ G Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VL RLR R +PV++LTA G + ++V L GADDYL KPFE+ EL AR+K L+RR Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 CG LVYD TR+F++ L L +RE VLE +I R G+ +SK L VF Sbjct: 121 LGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 L EE SADAIE+Y+ RLRKKL+ I+T RGLGYLL Sbjct: 181 LDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLL 218 >RSc1736 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 230 Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 113/218 (51%), Positives = 152/218 (69%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+EDNP+LA LE+ L + F VD DG AD +L ++Y ++LLDL LP+L G Sbjct: 1 MRILLVEDNPKLAGTLEEALGQAGFTVDCVHDGHAADLLLTTQDYALLLLDLGLPRLDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLRRLR R N +PVMILTA G+++E+V L GADDYL KPF++ E+ AR + L+RR Sbjct: 61 EVLRRLRLRRNPLPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSH 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 + ++ CG L YD + F + G LAL RE VLEVL+LR G+ V+K A+ + +F Sbjct: 121 GHERTQLQCGPLHYDGTSGAFTLRGEALALTGRERAVLEVLMLRDGRAVNKAAISEKIFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 ++E +ADAIE+Y+ RLRKKLD SG AI+ LRGLGYLL Sbjct: 181 INESVNADAIEIYVHRLRKKLDGSGVAIVMLRGLGYLL 218 >SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 225 Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 147/218 (67%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL+EDN LA L +L+ + VD+ +DG A V E++D+V+LDL LP++ G Sbjct: 1 MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 +VLR +R R N V+ILTA G+ +E+V+ L GADDYL+KPF+I E AR++VL+RRQ Sbjct: 61 DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 +A+ + GN+ D +R F+ G+ + +PARE +LE+L +R GK V+K A+++ + Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 L ++ S +AIE Y+SRLRK+L G + T RG+GY L Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFGLTVRTARGIGYYL 218