BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0003.p (268 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing prot... 244 1e-64 PA2337 [K] COG2207 AraC-type DNA-binding domain-containing prote... 200 3e-51 mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing prot... 189 8e-48 AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing prot... 146 6e-35 VC1260 [K] COG2207 AraC-type DNA-binding domain-containing prote... 109 6e-24 >AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 113/258 (43%), Positives = 168/258 (65%), Gaps = 2/258 (0%) Query: 1 VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAHQQVPAR 60 +WH+HPEYE+H++ A+SG F++GDF+G F PG L++TGPNLP NW+S + + VP R Sbjct: 38 TVRWHYHPEYEIHLVVATSGTFYIGDFVGRFSPGQLIMTGPNLPQNWISEIEPDEIVPTR 97 Query: 61 DLVLQFSRPFAERVVGAIPELSPLQEMLDGAARGLQFPDALGASITPLMQELAQAXWHAC 120 LV+QF F E ++ E+ ++ +LD + RG+ F D + PL+ L +A Sbjct: 98 SLVIQFPESFIEDACTSMAEMDVVRALLDRSRRGILFDDETSDRVRPLVLRLIEAQ-GLT 156 Query: 121 RVVLMMSVLERLASCPERKPLAGPGYDLNAQRHMSSTLNQVLSCIRQNLGGNLRETDLAE 180 R+ L +L+ L + P + LA Y+L+ S +N+ LS +RQ+L + E DLA+ Sbjct: 157 RLALFWEILDLLVNAPSSEVLASLSYELDLTGIGDSGINRALSHLRQHLTEQVEEIDLAD 216 Query: 181 LAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCT-ELSVTEVCYRVGFNNLSNF 239 + G S S+F+R FKRHTG T ++Y+N LR++ AC++L+ ++ V EVCY VGF+NLSNF Sbjct: 217 MVGQSPSAFSRAFKRHTGTTLVRYRNQLRIDLACQMLLADQDVKVAEVCYDVGFSNLSNF 276 Query: 240 NRQFLASKGMPPSRFRSL 257 NR FL KGM PSRFR++ Sbjct: 277 NRHFLKLKGMSPSRFRTI 294 >PA2337 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 301 Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 156/258 (60%), Gaps = 2/258 (0%) Query: 1 VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAHQQVPAR 60 + +WHFH EYE+H+I ASSGK F+GD+IG+F P L LTGPNLPHNW+S + + V R Sbjct: 34 LVRWHFHKEYELHLIVASSGKVFIGDYIGNFAPDTLFLTGPNLPHNWISQVEPDEVVARR 93 Query: 61 DLVLQFSRPFAERVVGAIPELSPLQEMLDGAARGLQFPD-ALGASITPLMQELAQAXWHA 119 D+++ F+ E G EL+ L +L A G++F D AL L+Q +A + Sbjct: 94 DMLVNFTDEVLEDGSGVFSELNRLAPLLARARYGIEFRDPALIGESRRLLQRIADSGG-M 152 Query: 120 CRVVLMMSVLERLASCPERKPLAGPGYDLNAQRHMSSTLNQVLSCIRQNLGGNLRETDLA 179 R+ ++E+LA C + + L+ A H +N+ + I Q+ +L + +A Sbjct: 153 TRLGYFFILMEQLAECEDYQLLSTVTSSQLADEHNVERINRAVDYIFQHYAQDLTQEQVA 212 Query: 180 ELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNF 239 GM+ + F+RFFK+ G F+++ N LR++++CELL +EL VTEVC+ GF+NLSNF Sbjct: 213 AHLGMTPTYFSRFFKQAAGRGFVEFVNRLRISKSCELLARSELPVTEVCFESGFSNLSNF 272 Query: 240 NRQFLASKGMPPSRFRSL 257 NR+F KGM P+ +R L Sbjct: 273 NRRFQQLKGMTPTGYRRL 290 >mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 305 Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 154/263 (58%), Gaps = 1/263 (0%) Query: 4 WHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAHQQVPARDLV 63 W+FHPEYE+H++ SSG VGD IG+FGPG L + G LPH+WV+ + + + RD+V Sbjct: 44 WNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGYLTIVGGGLPHDWVTAVRPGELIEGRDIV 103 Query: 64 LQFSRPFAERVVGAIPELSPLQEMLDGAARGLQFPDALGASITPLMQELAQAXWHACRVV 123 LQF G +PEL L+ L+ + RG+ F LM+ + A R+ Sbjct: 104 LQFDAQRLRGSAGLLPELRELEPFLERSLRGMVFHGRTALEGAGLMERMGTVHGLA-RLC 162 Query: 124 LMMSVLERLASCPERKPLAGPGYDLNAQRHMSSTLNQVLSCIRQNLGGNLRETDLAELAG 183 L + +++ LA E + L+ P + + + L+ + Q+ +L+ D+AE AG Sbjct: 163 LFLELVDLLARTDEYELLSSPDFSPVLDAASLDIIQRTLTYLFQHFAEDLKLPDVAERAG 222 Query: 184 MSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQF 243 MS S+F+RFF+++TG +F + LRL +AC+LL T++++T++C++VG+ N+SNFNR F Sbjct: 223 MSESTFSRFFQKNTGNSFSDHLAKLRLWQACKLLADTDVAITDICFQVGYMNISNFNRAF 282 Query: 244 LASKGMPPSRFRSLHRLNDDVRA 266 L M PS +R L R +RA Sbjct: 283 LRKHKMTPSSYRKLSRQRLTMRA 305 >AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 137/252 (54%), Gaps = 1/252 (0%) Query: 4 WHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAHQQVPARDLV 63 WH+HPE+E+ + S+G FVGD + ++G G+LVL GPNLPH W S+ + R +V Sbjct: 46 WHYHPEFELTLTLNSAGMRFVGDSVENYGDGDLVLLGPNLPHAWQSHGLINAPGVHRAVV 105 Query: 64 LQFSRPFAERVVGAIPELSPLQEMLDGAARGLQFPDALGASITPLMQELAQAXWHACRVV 123 F+R + E ++ PELS + +L + G+ F + A + + L + +++ Sbjct: 106 CWFTRDWIEGLIALTPELSAITPLLVESGHGICFGEDALAKVGERLATLHKIA-PEQQIL 164 Query: 124 LMMSVLERLASCPERKPLAGPGYDLNAQRHMSSTLNQVLSCIRQNLGGNLRETDLAELAG 183 ++ VL LA +R+PL+ + + + +VL+ I + G + L+E+A Sbjct: 165 TLLGVLVDLARVSDRRPLSAGEVTASTAPRDRARMQRVLNHIHAHYIGTISIKPLSEIAH 224 Query: 184 MSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQF 243 +S S R FKR T T QY LR+ AC LL T+LS+ + GF++ ++F+RQF Sbjct: 225 LSDSQLQRLFKRSTRMTISQYIGQLRVGGACRLLAQTDLSLARIAEETGFSDAAHFSRQF 284 Query: 244 LASKGMPPSRFR 255 A++GM P +R Sbjct: 285 RAARGMTPGDYR 296 >VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 299 Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 8/259 (3%) Query: 4 WHFHPEYEVHVITASS----GKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAHQQVPA 59 WH+H EYE+ + G +F GD IG L+L GP LPH ++ Sbjct: 34 WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPHMIAGRQLINKAQTL 93 Query: 60 RDLVLQFSRPFAERVVGAIPELSPLQEMLDGAARGLQFPDALGASITPLMQELAQAXWHA 119 ++ F + + +++ +P+ LQ + A+ G++ + + L+ + Q H+ Sbjct: 94 HSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGVRLSEQTATRVAELLANVDQQP-HS 152 Query: 120 CRVVLMMSVLERLASCPERKPLAGPGYDLNAQRHMSSTLNQV---LSCIRQNLGGNLRET 176 + + ++ L +A + + L+ Y + A S T ++ + Q+ ++ T Sbjct: 153 YQSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSDTHKKIQLAKQYVEQHYAQAIKIT 212 Query: 177 DLAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNL 236 DL +S SS R F++H G +F ++ R+ +ACELL + L + + R GF NL Sbjct: 213 DLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKACELLASSALPIALIAERTGFGNL 272 Query: 237 SNFNRQFLASKGMPPSRFR 255 SNFNRQF K M P FR Sbjct: 273 SNFNRQFKTLKTMTPREFR 291