BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0021.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0043 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptid...   276   2e-74
YPO0106 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptid...   246   2e-65
HI0496 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptida...   245   4e-65
PM1749 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptida...   243   1e-64
hslV [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase...   240   1e-63

>RSc0043 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Rso Ralstonia solanacearum
          Length = 178

 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/178 (79%), Positives = 163/178 (91%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQ+HGTTI+SVRRGNQVALGGDGQVTLGNIVMKG+ARKVR +Y GKVLVGFAG TADAF
Sbjct: 1   MEQYHGTTIVSVRRGNQVALGGDGQVTLGNIVMKGTARKVRTIYDGKVLVGFAGATADAF 60

Query: 61  TLLELFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADKETTLVITGNGDVLE 120
           +LL+ FEAKL+K+QG+L+RA+V+LAKDWRTDR LR LEAML+ AD+E+TLVITGNGDVL+
Sbjct: 61  SLLDRFEAKLQKYQGHLLRAAVDLAKDWRTDRALRHLEAMLIVADRESTLVITGNGDVLD 120

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETLE 178
           P  GI AIGSGG+YAQSAAKAL ENTEL+P ++V+KSL IAGELCIYTN N +IETLE
Sbjct: 121 PEGGIAAIGSGGAYAQSAAKALMENTELAPRDVVEKSLRIAGELCIYTNTNFVIETLE 178


>YPO0106 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Ype Yersinia pestis
          Length = 174

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/171 (69%), Positives = 143/171 (83%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLELF 66
           TTI+SVRR   V +GGDGQVTLGN VMKG+A+KVR+LY+ KV+ GFAGGTADAFTL ELF
Sbjct: 2   TTIVSVRRDGHVVIGGDGQVTLGNTVMKGNAKKVRRLYNNKVIAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADKETTLVITGNGDVLEPNDGIG 126
           E KLE HQG+L +A+VELAKDWRTDRMLR+LEA+L  AD+  +L+ITGNGDV++P D + 
Sbjct: 62  ERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPEDDLI 121

Query: 127 AIGSGGSYAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETL 177
           AIGSGG YAQSAA+AL ENTEL   +IV+KSL+IAG++CIYTN    IE L
Sbjct: 122 AIGSGGPYAQSAARALLENTELGARDIVEKSLSIAGDICIYTNRFQTIEEL 172


>HI0496 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Hin Haemophilus influenzae
          Length = 175

 Score =  245 bits (625), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/172 (70%), Positives = 147/172 (85%), Gaps = 1/172 (0%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLELF 66
           TTI+SVRR  QV +GGDGQV+LGN VMKG+ARKVR+LY+GKVL GFAGGTADAFTL ELF
Sbjct: 2   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADKETTLVITGNGDVLEP-NDGI 125
           E KLE HQG+L++++VELAKDWRTDR LR+LEAML+ AD++ +L+ITG GDV++P  D I
Sbjct: 62  ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 121

Query: 126 GAIGSGGSYAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETL 177
            AIGSGG+YA SAA+AL ENTELS  EIV+KSL IAG++C++TN N  IE L
Sbjct: 122 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL 173


>PM1749 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Pmu Pasteurella multocida
          Length = 176

 Score =  243 bits (621), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 147/172 (85%), Gaps = 1/172 (0%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLELF 66
           TTI+SVRR  QV +GGDGQV+LGN VMKG+ARKVR+LY+GKVL GFAGGTADAFTL ELF
Sbjct: 2   TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADKETTLVITGNGDVLEPN-DGI 125
           E KLE HQG+L++++VELAKDWRTDR LR+LEAML+ AD++ +L+ITG GDV++P  D I
Sbjct: 62  ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEADQI 121

Query: 126 GAIGSGGSYAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETL 177
            AIGSGG++A SAA+AL ENTELS  EIV+KSL IAG++C+YTN +  IE L
Sbjct: 122 LAIGSGGNFALSAARALVENTELSAREIVEKSLKIAGDICVYTNTHFTIEEL 173


>hslV [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           Eco Escherichia coli K12
          Length = 176

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 141/171 (82%)

Query: 7   TTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAFTLLELF 66
           TTI+SVRR   V + GDGQ TLGN VMKG+ +KVR+LY+ KV+ GFAGGTADAFTL ELF
Sbjct: 2   TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELF 61

Query: 67  EAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADKETTLVITGNGDVLEPNDGIG 126
           E KLE HQG+L++A+VELAKDWRTDRMLR+LEA+L  AD+  +L+ITGNGDV++P + + 
Sbjct: 62  ERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLI 121

Query: 127 AIGSGGSYAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETL 177
           AIGSGG YAQ+AA+AL ENTELS  EI +K+L IAG++CIYTN  H IE L
Sbjct: 122 AIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEEL 172