BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0175.p (137 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001100075.1| integration host factor subunit alpha [Hermi... 239 1e-61 ref|YP_001353183.1| integration host factor alpha-subunit [Janth... 238 3e-61 ref|YP_004752163.1| integration host factor subunit alpha [Colli... 237 5e-61 ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalob... 230 6e-59 ref|YP_003775392.1| integration host factor alpha-subunit [Herba... 211 3e-53 ref|YP_002911956.1| integration host factor subunit alpha [Burkh... 186 1e-45 ref|YP_004360380.1| Integration host factor alpha subunit [Burkh... 185 2e-45 ref|YP_001579958.1| integration host factor subunit alpha [Burkh... 184 5e-45 ref|YP_001945934.1| integration host factor subunit alpha [Burkh... 183 7e-45 ref|YP_368861.1| integration host factor subunit alpha [Burkhold... 182 1e-44 >ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas arsenicoxydans] emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas arsenicoxydans] Length = 151 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 116/129 (89%), Positives = 125/129 (96%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN+VNS+E QSVL ADL+RA+LE+Q RSQA+K+LPTLTKAELAELLFEQVGLNKREAKDM Sbjct: 15 MNDVNSSELQSVLAADLNRAMLEAQVRSQAEKDLPTLTKAELAELLFEQVGLNKREAKDM 74 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK Sbjct: 75 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 134 Query: 121 LKEMVELSS 129 LK MVE+S+ Sbjct: 135 LKSMVEVSN 143 >ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp. Marseille] gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp. Marseille] Length = 165 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 117/133 (87%), Positives = 125/133 (93%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN+VNS E QSVL ADL+RA++E+Q RSQA+KNLPTLTKAELAELLFEQVGLNKREAKDM Sbjct: 29 MNDVNSAELQSVLAADLNRAMMEAQVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 88 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VETFFDEIRNALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK Sbjct: 89 VETFFDEIRNALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 148 Query: 121 LKEMVELSSGSPV 133 LK MVE SS P+ Sbjct: 149 LKGMVEDSSQQPL 161 >ref|YP_004752163.1| integration host factor subunit alpha [Collimonas fungivorans Ter331] gb|AEK61340.1| Integration host factor alpha subunit [Collimonas fungivorans Ter331] Length = 147 Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 115/134 (85%), Positives = 127/134 (94%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MNN+ + EF+SVLDADL+RA+ E+QARSQA+KNLPTLTKAELAELLFEQVGLNKREAKDM Sbjct: 1 MNNMQTVEFESVLDADLNRAMREAQARSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VETFFDEIR+ALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK Sbjct: 61 VETFFDEIRDALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 Query: 121 LKEMVELSSGSPVE 134 LK MVE +S P++ Sbjct: 121 LKGMVEAASLQPIQ 134 >ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 230 bits (586), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 113/126 (89%), Positives = 119/126 (94%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN+V S EFQSVL ADL+RA+LE+Q RSQA+K LPTLTKAELAELLFEQVGLNKREAKDM Sbjct: 1 MNDVISTEFQSVLSADLNRAMLEAQVRSQAEKELPTLTKAELAELLFEQVGLNKREAKDM 60 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VETFFDEIR+ALERGE VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK Sbjct: 61 VETFFDEIRDALERGELVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 Query: 121 LKEMVE 126 LK MVE Sbjct: 121 LKSMVE 126 >ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum seropedicae SmR1] Length = 104 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 103/104 (99%), Positives = 104/104 (100%) Query: 34 LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 93 +PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ Sbjct: 1 MPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 60 Query: 94 RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPVEMSV 137 RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPVEMSV Sbjct: 61 RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPVEMSV 104 >ref|YP_002911956.1| integration host factor subunit alpha [Burkholderia glumae BGR1] gb|ACR29252.1| integration host factor subunit alpha [Burkholderia glumae BGR1] Length = 133 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 93/133 (69%), Positives = 107/133 (80%), Gaps = 2/133 (1%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN++NS+EF+++L A R+ L A PTLTKAELAELLF+ VGLNKREAKDM Sbjct: 1 MNDMNSSEFEALLTA--QRSALNRDAAPAPSGETPTLTKAELAELLFDSVGLNKREAKDM 58 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VE FF+ IR+ALE GE+VKLSGFGNFQLRDKPQRPGRNPKTGE IPI ARRVVTFHASQK Sbjct: 59 VEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQK 118 Query: 121 LKEMVELSSGSPV 133 LK +VE S +P+ Sbjct: 119 LKALVENGSDTPI 131 >ref|YP_004360380.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3] gb|AEA60424.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3] Length = 133 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/133 (69%), Positives = 107/133 (80%), Gaps = 2/133 (1%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN++NS+EF+++L A R+ L + PTLTKAELAELLF+ VGLNKREAKDM Sbjct: 1 MNDMNSSEFEALLTA--QRSALNRDVAAAPSGETPTLTKAELAELLFDSVGLNKREAKDM 58 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VE FF+ IR+ALE GE+VKLSGFGNFQLRDKPQRPGRNPKTGE IPI ARRVVTFHASQK Sbjct: 59 VEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQK 118 Query: 121 LKEMVELSSGSPV 133 LK +VE S +P+ Sbjct: 119 LKALVENGSDTPI 131 >ref|YP_001579958.1| integration host factor subunit alpha [Burkholderia multivorans ATCC 17616] gb|ABX15461.1| integration host factor, alpha subunit [Burkholderia multivorans ATCC 17616] Length = 136 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 90/126 (71%), Positives = 104/126 (82%), Gaps = 2/126 (1%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN++ S+EF+++L A R+ + A + A PTLTKAELAELLF+ VGLNKREAKDM Sbjct: 4 MNDMTSSEFEALLTA--QRSAMNRDAAASASTETPTLTKAELAELLFDSVGLNKREAKDM 61 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VE FF+ IR+ALE GE+VKLSGFGNFQLRDKPQRPGRNPKTGE IPI ARRVVTFHASQK Sbjct: 62 VEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQK 121 Query: 121 LKEMVE 126 LK +VE Sbjct: 122 LKALVE 127 >ref|YP_001945934.1| integration host factor subunit alpha [Burkholderia multivorans ATCC 17616] dbj|BAG43398.1| integration host factor alpha subunit [Burkholderia multivorans ATCC 17616] Length = 133 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 90/126 (71%), Positives = 104/126 (82%), Gaps = 2/126 (1%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN++ S+EF+++L A R+ + A + A PTLTKAELAELLF+ VGLNKREAKDM Sbjct: 1 MNDMTSSEFEALLTA--QRSAMNRDAAASASTETPTLTKAELAELLFDSVGLNKREAKDM 58 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VE FF+ IR+ALE GE+VKLSGFGNFQLRDKPQRPGRNPKTGE IPI ARRVVTFHASQK Sbjct: 59 VEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQK 118 Query: 121 LKEMVE 126 LK +VE Sbjct: 119 LKALVE 124 >ref|YP_368861.1| integration host factor subunit alpha [Burkholderia sp. 383] ref|YP_620881.1| integration host factor subunit alpha [Burkholderia cenocepacia AU 1054] ref|YP_835126.1| integration host factor subunit alpha [Burkholderia cenocepacia HI2424] ref|YP_001764755.1| integration host factor subunit alpha [Burkholderia cenocepacia MC0-3] ref|YP_002230617.1| integration host factor subunit alpha [Burkholderia cenocepacia J2315] ref|ZP_04938925.1| Integration host factor alpha subunit [Burkholderia cenocepacia PC184] ref|ZP_04945870.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158] gb|ABB08217.1| Integration host factor, alpha subunit [Burkholderia sp. 383] gb|ABF75908.1| integration host factor, alpha subunit [Burkholderia cenocepacia AU 1054] gb|ABK08233.1| integration host factor, alpha subunit [Burkholderia cenocepacia HI2424] gb|EAY62096.1| Integration host factor alpha subunit [Burkholderia cenocepacia PC184] gb|EAY69041.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158] gb|ACA90633.1| integration host factor, alpha subunit [Burkholderia cenocepacia MC0-3] emb|CAR51786.1| integration host factor alpha-subunit [Burkholderia cenocepacia J2315] Length = 131 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/126 (71%), Positives = 104/126 (82%), Gaps = 2/126 (1%) Query: 1 MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 60 MN++ S+EF+++L A R+ + A + A PTLTKAELAELLF+ VGLNKREAKDM Sbjct: 4 MNDMTSSEFEALLTA--QRSAMNRDASAPASTETPTLTKAELAELLFDSVGLNKREAKDM 61 Query: 61 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120 VE FF+ IR+ALE GE+VKLSGFGNFQLRDKPQRPGRNPKTGE IPI ARRVVTFHASQK Sbjct: 62 VEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQK 121 Query: 121 LKEMVE 126 LK +VE Sbjct: 122 LKALVE 127