BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0151.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775373.1| LuxR family response regulator protein [Herb... 432 e-119 ref|XP_002540217.1| Transcriptional regulatory protein uhpA, put... 358 3e-97 ref|YP_004754933.1| two component LuxR family transcriptional re... 321 4e-86 ref|YP_001863696.1| two component LuxR family transcriptional re... 246 1e-63 ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxi... 246 2e-63 ref|YP_003910449.1| LuxR family two component transcriptional re... 243 1e-62 ref|YP_004230641.1| LuxR family two component transcriptional re... 243 2e-62 gb|EFV84550.1| DNA-binding response regulator [Achromobacter xyl... 242 2e-62 gb|EGP43331.1| response regulator 7 [Achromobacter xylosoxidans ... 242 3e-62 ref|ZP_02884100.1| two component transcriptional regulator, LuxR... 241 5e-62 >ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63465.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/217 (99%), Positives = 216/217 (99%) Query: 1 MTAAPARAPATTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDL 60 MTAAPARAPA TRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDL Sbjct: 1 MTAAPARAPAATRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDL 60 Query: 61 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD 120 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD Sbjct: 61 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD 120 Query: 121 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS 180 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS Sbjct: 121 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS 180 Query: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP 217 VRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP Sbjct: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP 217 >ref|XP_002540217.1| Transcriptional regulatory protein uhpA, putative [Ricinus communis] gb|EEF22167.1| Transcriptional regulatory protein uhpA, putative [Ricinus communis] Length = 179 Score = 358 bits (919), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 178/179 (99%), Positives = 178/179 (99%) Query: 39 VVAEAGHADEALAAAAAQEIDLTLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAE 98 VVAEAGHADEALAAAAAQEIDLTLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAE Sbjct: 1 VVAEAGHADEALAAAAAQEIDLTLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAE 60 Query: 99 YVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQRER 158 YVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQRER Sbjct: 61 YVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQRER 120 Query: 159 EVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRSAGGAP 217 EVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRS GGAP Sbjct: 121 EVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRSVGGAP 179 >ref|YP_004754933.1| two component LuxR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64110.1| two component transcriptional regulator, LuxR family [Collimonas fungivorans Ter331] Length = 212 Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 159/205 (77%), Positives = 177/205 (86%), Gaps = 5/205 (2%) Query: 11 TTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMR-- 68 TT+IML+DDHPLVRDGLRARLE VPG +VAEAG ADEAL A Q IDL LMDIN+R Sbjct: 5 TTKIMLVDDHPLVRDGLRARLEAVPGFAIVAEAGSADEALQRAGEQAIDLVLMDINLRSN 64 Query: 69 ---GINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAI 125 G NGI+LTA FH PEIAVLILSMHDK EY+MQS+QAGARGYVLKDAP +DIVHAI Sbjct: 65 CNGGCNGIDLTAQFHVSFPEIAVLILSMHDKTEYLMQSVQAGARGYVLKDAPGKDIVHAI 124 Query: 126 ETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVE 185 ETV SGG+YYSAALA++L +P+ P +LLT RER+VL HIANGESNKQIARELDLSVRTVE Sbjct: 125 ETVISGGMYYSAALAQKLARPMTPGQLLTARERQVLQHIANGESNKQIARELDLSVRTVE 184 Query: 186 THRLNIKRKLNIDGQAELIKFAVES 210 THRLNIKRKL+I+GQAELIKFAVE+ Sbjct: 185 THRLNIKRKLDIEGQAELIKFAVEN 209 >ref|YP_001863696.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC76646.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 213 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/205 (60%), Positives = 153/205 (74%), Gaps = 3/205 (1%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGING 72 R++L+DDHPLVRDGLRARLE VPG VV EAG+A++A+ AAAQE DL LMD+ M+GING Sbjct: 9 RLILVDDHPLVRDGLRARLEAVPGFAVVGEAGNAEQAMTLAAAQEPDLVLMDVGMKGING 68 Query: 73 IELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 I L ALFH R P+I VL+LSMHD EYV +++AGARGY+LKD+P +I+ AI V G Sbjct: 69 ITLAALFHERFPDIRVLMLSMHDNVEYVTNAVRAGARGYLLKDSPGAEIIRAIGAVLDGK 128 Query: 133 IYYSAALARQLTQPLP---PRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRL 189 ++S L +L Q P E LT RER++L +A G S+KQIA+ LSVRTVETHR Sbjct: 129 TFFSEGLGARLIQASTLRDPTERLTPRERDILDQLAEGLSSKQIAQRSGLSVRTVETHRQ 188 Query: 190 NIKRKLNIDGQAELIKFAVESRSAG 214 N+KRKL IDGQAELIKFAVE R +G Sbjct: 189 NLKRKLEIDGQAELIKFAVEHRRSG 213 >ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxidans A8] gb|ADP16216.1| response regulator 7 [Achromobacter xylosoxidans A8] Length = 215 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/209 (63%), Positives = 164/209 (78%), Gaps = 9/209 (4%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEID---------LTLM 63 R++LIDDHPLVRDGLR RLETVP L VV EAG+A A A AA + L LM Sbjct: 6 RLLLIDDHPLVRDGLRLRLETVPQLRVVGEAGNAAAAQAFLAACLAEDPQGGTLPHLALM 65 Query: 64 DINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVH 123 D+NM G+ G+ELTAL H R+P+IAVL+LSMHD EY++Q+++AGARGY+LKD P+Q+IV Sbjct: 66 DLNMPGVGGLELTALLHERYPQIAVLVLSMHDNPEYMVQAVKAGARGYLLKDEPAQEIVT 125 Query: 124 AIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRT 183 AI+ V +G Y+SAA+A +L+Q P +LTQRER+VL HIA+GE+NKQIA+ L LSVRT Sbjct: 126 AIDAVMAGRSYFSAAVAVRLSQATAPATMLTQRERDVLRHIASGEANKQIAQALGLSVRT 185 Query: 184 VETHRLNIKRKLNIDGQAELIKFAVESRS 212 VETHRLNIKRKL IDGQAELIK+AVE+R Sbjct: 186 VETHRLNIKRKLGIDGQAELIKYAVENRG 214 >ref|YP_003910449.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61158.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 215 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 125/204 (61%), Positives = 155/204 (75%), Gaps = 3/204 (1%) Query: 11 TTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGI 70 TTR++L+DDHPLVRDGLRARLE V LEVV EAG+A EALA AA+ E L LMD+ M G+ Sbjct: 8 TTRLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNAQEALALAASHEPHLVLMDVGMNGM 67 Query: 71 NGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRS 130 NGI L +FH R P I VL+LSMHD +YV Q+++AGA GYVLKD+P+ +I+ AI V Sbjct: 68 NGIALAGMFHERFPAIRVLMLSMHDNLQYVTQAVRAGASGYVLKDSPATEIIQAISAVLE 127 Query: 131 GGIYYSAALARQLTQP---LPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETH 187 G Y+SA L +L Q P E LT RER++L +A+G S+KQIA+ +LSVRTVETH Sbjct: 128 GKTYFSAGLGARLIQASAMQSPLERLTPRERDILDALADGLSSKQIAQRTELSVRTVETH 187 Query: 188 RLNIKRKLNIDGQAELIKFAVESR 211 RLN+KRKL+I+GQAELIKFAVE+R Sbjct: 188 RLNLKRKLDIEGQAELIKFAVENR 211 >ref|YP_004230641.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX57581.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 215 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 126/204 (61%), Positives = 153/204 (75%), Gaps = 3/204 (1%) Query: 11 TTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGI 70 T R++L+DDHPLVRDGLRARLE V LEVV EAG+A EALA AA+ E L LMD+ M G+ Sbjct: 8 TARLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNAQEALALAASHEPHLVLMDVGMNGM 67 Query: 71 NGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRS 130 NGI L +FH R P I VL+LSMHD EYV Q+++AGA GYVLKD+P+ +I+ AI V Sbjct: 68 NGIALAGMFHERFPGIRVLMLSMHDNLEYVTQAVRAGASGYVLKDSPATEIIQAISAVLD 127 Query: 131 GGIYYSAALARQLTQP---LPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETH 187 G Y+SA L +L Q P E LT RER++L +A G S+KQIA+ DLSVRTVETH Sbjct: 128 GKTYFSAGLGARLIQASAMQSPVERLTPRERDILDALAEGLSSKQIAQRNDLSVRTVETH 187 Query: 188 RLNIKRKLNIDGQAELIKFAVESR 211 RLN+KRKL+I+GQAELIKFAVE+R Sbjct: 188 RLNLKRKLDIEGQAELIKFAVENR 211 >gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54] Length = 218 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/212 (60%), Positives = 163/212 (76%), Gaps = 15/212 (7%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHA------------DEALAAAAAQEIDL 60 R++LIDDHPLVRDGLR RLETVP L+VV EAG+A ++ L Q L Sbjct: 9 RLLLIDDHPLVRDGLRLRLETVPHLQVVGEAGNAAAALAFLQACLAEDPLGGTLPQ---L 65 Query: 61 TLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQD 120 LMD+NM G+ G+ELTA H R+P+IAVL+LSMHD AEY++Q+++AGARGY+LKD P+Q+ Sbjct: 66 VLMDLNMPGVGGLELTAQLHERYPQIAVLVLSMHDNAEYMVQAVRAGARGYLLKDEPAQE 125 Query: 121 IVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLS 180 I+ AI+ V +G Y+SAA++ +L+Q P LLTQRER+VL HIA+G +NKQIA+ L LS Sbjct: 126 ILAAIDAVMTGRTYFSAAVSLRLSQASAPATLLTQRERDVLRHIASGHANKQIAQALGLS 185 Query: 181 VRTVETHRLNIKRKLNIDGQAELIKFAVESRS 212 VRTVETHRLNIKRKL IDGQAELIK+AVE+R Sbjct: 186 VRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217 >gb|EGP43331.1| response regulator 7 [Achromobacter xylosoxidans AXX-A] Length = 218 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 164/208 (78%), Gaps = 9/208 (4%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEID---------LTLM 63 R++LIDDHPLVRDGLR RLETVP L+VV EAG+A ALA A + L LM Sbjct: 9 RLLLIDDHPLVRDGLRLRLETVPHLQVVGEAGNAAAALAFLQACLAEDPQGGTLPQLALM 68 Query: 64 DINMRGINGIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVH 123 D+NM G+ G+ELTA H R+P+IAVL+LSMHD AEY++Q+++AGARGY+LKD P+Q+I+ Sbjct: 69 DLNMPGVGGLELTAQLHERYPQIAVLVLSMHDNAEYMVQAVRAGARGYLLKDEPAQEILA 128 Query: 124 AIETVRSGGIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRT 183 AI+ V +G Y+SAA++ +L+Q P LLTQRER+VL HIA+G +NKQIA+ L LSVRT Sbjct: 129 AIDAVMTGRTYFSAAVSLRLSQASAPATLLTQRERDVLRHIASGHANKQIAQALGLSVRT 188 Query: 184 VETHRLNIKRKLNIDGQAELIKFAVESR 211 VETHRLNIKRKL IDGQAELIK+AVE+R Sbjct: 189 VETHRLNIKRKLGIDGQAELIKYAVENR 216 >ref|ZP_02884100.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gb|EDT10104.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 215 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/202 (62%), Positives = 152/202 (75%), Gaps = 3/202 (1%) Query: 13 RIMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGING 72 R++L+DDHPLVRDGLRARLE V LEVV EAG+A EALA AA+ E L LMD+ M G+NG Sbjct: 10 RLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNAQEALALAASLEPHLVLMDVGMNGMNG 69 Query: 73 IELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 I L +FH R P I VL+LSMHD EYV Q+++AGA GYVLKD+PS +I+ AI V G Sbjct: 70 IALAGMFHERFPAIRVLMLSMHDNLEYVTQAVRAGASGYVLKDSPSTEIIQAISAVLDGK 129 Query: 133 IYYSAALARQLTQP---LPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRL 189 Y+SA L +L Q P E LT RER++L +A G S+KQIA+ DLSVRTVETHRL Sbjct: 130 TYFSAGLGARLIQASAMQSPVERLTPRERDILDALAEGLSSKQIAQRNDLSVRTVETHRL 189 Query: 190 NIKRKLNIDGQAELIKFAVESR 211 N+KRKL+I+GQAELIKFAVE+R Sbjct: 190 NLKRKLDIEGQAELIKFAVENR 211